Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.77■□□□□ 0.6
CXCL12P48061 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CXCL12P48061 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CXCL12P48061 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.77■□□□□ 0.59
CXCL12P48061 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.76■□□□□ 0.59
CXCL12P48061 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.76■□□□□ 0.59
CXCL12P48061 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 KRT18P13-201ENST00000400056 1290 ntBASIC18.76■□□□□ 0.59
CXCL12P48061 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
CXCL12P48061 TSPY12P-201ENST00000421279 868 ntBASIC18.76■□□□□ 0.59
CXCL12P48061 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.76■□□□□ 0.59
CXCL12P48061 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CXCL12P48061 AP001005.1-201ENST00000571755 1248 ntBASIC18.76■□□□□ 0.59
CXCL12P48061 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.76■□□□□ 0.59
CXCL12P48061 REXO1L6P-202ENST00000619970 1078 ntBASIC18.76■□□□□ 0.59
CXCL12P48061 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.76■□□□□ 0.59
CXCL12P48061 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.76■□□□□ 0.59
CXCL12P48061 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.76■□□□□ 0.59
CXCL12P48061 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CXCL12P48061 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CXCL12P48061 AC008556.1-201ENST00000610908 2040 ntBASIC18.76■□□□□ 0.59
CXCL12P48061 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.76■□□□□ 0.59
CXCL12P48061 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL12P48061 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 RCC2P3-201ENST00000418112 1537 ntBASIC18.75■□□□□ 0.59
CXCL12P48061 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CXCL12P48061 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CXCL12P48061 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.75■□□□□ 0.59
CXCL12P48061 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
CXCL12P48061 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CXCL12P48061 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.75■□□□□ 0.59
CXCL12P48061 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.75■□□□□ 0.59
CXCL12P48061 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.75■□□□□ 0.59
CXCL12P48061 AL592071.1-201ENST00000611956 408 ntBASIC18.75■□□□□ 0.59
CXCL12P48061 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.75■□□□□ 0.59
CXCL12P48061 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.75■□□□□ 0.59
CXCL12P48061 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.75■□□□□ 0.59
CXCL12P48061 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL12P48061 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.74■□□□□ 0.59
CXCL12P48061 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.74■□□□□ 0.59
CXCL12P48061 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.74■□□□□ 0.59
CXCL12P48061 MIR574-201ENST00000385209 96 ntBASIC18.74■□□□□ 0.59
CXCL12P48061 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.74■□□□□ 0.59
CXCL12P48061 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.74■□□□□ 0.59
CXCL12P48061 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.74■□□□□ 0.59
CXCL12P48061 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.74■□□□□ 0.59
CXCL12P48061 AF238378.1-201ENST00000526806 358 ntBASIC18.74■□□□□ 0.59
CXCL12P48061 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.74■□□□□ 0.59
CXCL12P48061 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.74■□□□□ 0.59
CXCL12P48061 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CXCL12P48061 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL12P48061 NSUN5P1-202ENST00000421140 1535 ntBASIC18.74■□□□□ 0.59
CXCL12P48061 NSUN5P2-203ENST00000457352 1529 ntBASIC18.74■□□□□ 0.59
CXCL12P48061 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CXCL12P48061 IL9RP2-201ENST00000423948 1312 ntBASIC18.74■□□□□ 0.59
CXCL12P48061 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.73■□□□□ 0.59
CXCL12P48061 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL12P48061 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL12P48061 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL12P48061 IGHGP-201ENST00000390555 1178 ntBASIC18.73■□□□□ 0.59
CXCL12P48061 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CXCL12P48061 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CXCL12P48061 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CXCL12P48061 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms