Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TNFSF9P41273 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
TNFSF9P41273 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
TNFSF9P41273 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.4■□□□□ 0.86
TNFSF9P41273 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.4■□□□□ 0.86
TNFSF9P41273 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 BX664615.1-201ENST00000443558 458 ntBASIC20.4■□□□□ 0.86
TNFSF9P41273 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
TNFSF9P41273 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.4■□□□□ 0.86
TNFSF9P41273 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
TNFSF9P41273 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFSF9P41273 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TNFSF9P41273 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TNFSF9P41273 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.39■□□□□ 0.86
TNFSF9P41273 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
TNFSF9P41273 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TNFSF9P41273 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.39■□□□□ 0.86
TNFSF9P41273 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TNFSF9P41273 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TNFSF9P41273 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TNFSF9P41273 AL109659.2-201ENST00000606809 1674 ntBASIC20.39■□□□□ 0.86
TNFSF9P41273 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TNFSF9P41273 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.39■□□□□ 0.85
TNFSF9P41273 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.39■□□□□ 0.85
TNFSF9P41273 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.39■□□□□ 0.85
TNFSF9P41273 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.39■□□□□ 0.85
TNFSF9P41273 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.39■□□□□ 0.85
TNFSF9P41273 AL512604.3-201ENST00000569583 964 ntBASIC20.39■□□□□ 0.85
TNFSF9P41273 WWOX-216ENST00000569818 525 ntBASIC20.39■□□□□ 0.85
TNFSF9P41273 MIR3180-5-201ENST00000583743 153 ntBASIC20.39■□□□□ 0.85
TNFSF9P41273 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.39■□□□□ 0.85
TNFSF9P41273 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.39■□□□□ 0.85
TNFSF9P41273 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
TNFSF9P41273 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.39■□□□□ 0.85
TNFSF9P41273 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TNFSF9P41273 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.38■□□□□ 0.85
TNFSF9P41273 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFSF9P41273 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TNFSF9P41273 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TNFSF9P41273 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.38■□□□□ 0.85
TNFSF9P41273 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TNFSF9P41273 AC006333.2-201ENST00000607957 2099 ntBASIC20.38■□□□□ 0.85
TNFSF9P41273 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.38■□□□□ 0.85
TNFSF9P41273 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFSF9P41273 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFSF9P41273 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.38■□□□□ 0.85
TNFSF9P41273 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFSF9P41273 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFSF9P41273 MIR1224-201ENST00000408193 85 ntBASIC20.38■□□□□ 0.85
TNFSF9P41273 DUX4L26-201ENST00000489078 1255 ntBASIC20.38■□□□□ 0.85
TNFSF9P41273 COX11P1-201ENST00000489116 835 ntBASIC20.38■□□□□ 0.85
TNFSF9P41273 YBX1P2-201ENST00000489612 999 ntBASIC20.38■□□□□ 0.85
TNFSF9P41273 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.38■□□□□ 0.85
TNFSF9P41273 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.38■□□□□ 0.85
TNFSF9P41273 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
TNFSF9P41273 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFSF9P41273 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TNFSF9P41273 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFSF9P41273 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
TNFSF9P41273 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TNFSF9P41273 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.38■□□□□ 0.85
TNFSF9P41273 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFSF9P41273 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFSF9P41273 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.37■□□□□ 0.85
TNFSF9P41273 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.37■□□□□ 0.85
TNFSF9P41273 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.37■□□□□ 0.85
TNFSF9P41273 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFSF9P41273 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TNFSF9P41273 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFSF9P41273 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TNFSF9P41273 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFSF9P41273 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFSF9P41273 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFSF9P41273 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFSF9P41273 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.37■□□□□ 0.85
TNFSF9P41273 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFSF9P41273 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.37■□□□□ 0.85
TNFSF9P41273 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
TNFSF9P41273 AK4P3-201ENST00000418260 669 ntBASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms