Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DMBP28068 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC14.38□□□□□ -0.11
HLA-DMBP28068 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 BAALC-201ENST00000297574 801 ntTSL 3 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 AL160286.2-201ENST00000567150 934 ntBASIC14.37□□□□□ -0.11
HLA-DMBP28068 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 ANO7L1-203ENST00000602586 1720 ntBASIC14.37□□□□□ -0.11
HLA-DMBP28068 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DMBP28068 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DMBP28068 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 AR-207ENST00000612010 3896 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 TSPY23P-201ENST00000440136 739 ntBASIC14.36□□□□□ -0.11
HLA-DMBP28068 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 C1QBPP2-201ENST00000528754 825 ntBASIC14.36□□□□□ -0.11
HLA-DMBP28068 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 C1QL1P1-201ENST00000568105 661 ntBASIC14.36□□□□□ -0.11
HLA-DMBP28068 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 AC069544.1-201ENST00000609399 999 ntBASIC14.36□□□□□ -0.11
HLA-DMBP28068 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 FAM197Y4-202ENST00000622692 608 ntBASIC14.36□□□□□ -0.11
HLA-DMBP28068 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DMBP28068 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms