Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 REXO1L6P-202ENST00000619970 1078 ntBASIC16.45■□□□□ 0.22
COL8A1P27658 AC233702.3-201ENST00000578656 1387 ntBASIC16.45■□□□□ 0.22
COL8A1P27658 AC036111.1-201ENST00000533973 1582 ntBASIC16.45■□□□□ 0.22
COL8A1P27658 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.45■□□□□ 0.22
COL8A1P27658 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL8A1P27658 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.45■□□□□ 0.22
COL8A1P27658 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.45■□□□□ 0.22
COL8A1P27658 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL8A1P27658 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.45■□□□□ 0.22
COL8A1P27658 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
COL8A1P27658 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL8A1P27658 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC16.44■□□□□ 0.22
COL8A1P27658 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 SMG8-203ENST00000578922 2178 ntBASIC16.44■□□□□ 0.22
COL8A1P27658 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC16.44■□□□□ 0.22
COL8A1P27658 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.44■□□□□ 0.22
COL8A1P27658 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 AC243591.1-201ENST00000452967 1364 ntBASIC16.44■□□□□ 0.22
COL8A1P27658 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.44■□□□□ 0.22
COL8A1P27658 RNPS1P1-201ENST00000507437 918 ntBASIC16.44■□□□□ 0.22
COL8A1P27658 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.44■□□□□ 0.22
COL8A1P27658 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
COL8A1P27658 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
COL8A1P27658 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.44■□□□□ 0.22
COL8A1P27658 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
COL8A1P27658 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
COL8A1P27658 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
COL8A1P27658 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
COL8A1P27658 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
COL8A1P27658 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.44■□□□□ 0.22
COL8A1P27658 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
COL8A1P27658 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
COL8A1P27658 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
COL8A1P27658 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL8A1P27658 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
COL8A1P27658 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC16.43■□□□□ 0.22
COL8A1P27658 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
COL8A1P27658 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC16.43■□□□□ 0.22
COL8A1P27658 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 NUS1P2-201ENST00000417358 873 ntBASIC16.43■□□□□ 0.22
COL8A1P27658 RPL13AP23-201ENST00000480739 586 ntBASIC16.43■□□□□ 0.22
COL8A1P27658 AC009065.1-201ENST00000564055 1225 ntBASIC16.43■□□□□ 0.22
COL8A1P27658 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.43■□□□□ 0.22
COL8A1P27658 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.43■□□□□ 0.22
COL8A1P27658 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.43■□□□□ 0.22
COL8A1P27658 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 GPAT2P1-201ENST00000444924 1672 ntBASIC16.43■□□□□ 0.22
COL8A1P27658 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.43■□□□□ 0.22
COL8A1P27658 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.43■□□□□ 0.22
COL8A1P27658 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL8A1P27658 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
COL8A1P27658 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
COL8A1P27658 AC073130.3-201ENST00000624389 2278 ntBASIC16.42■□□□□ 0.22
COL8A1P27658 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.42■□□□□ 0.22
COL8A1P27658 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.42■□□□□ 0.22
COL8A1P27658 SEC1P-202ENST00000473944 940 ntBASIC16.42■□□□□ 0.22
COL8A1P27658 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.42■□□□□ 0.22
COL8A1P27658 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.42■□□□□ 0.22
COL8A1P27658 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.42■□□□□ 0.22
COL8A1P27658 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.42■□□□□ 0.22
COL8A1P27658 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
COL8A1P27658 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.42■□□□□ 0.22
COL8A1P27658 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL8A1P27658 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms