Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC23.79■■□□□ 1.4
COL5A3P25940 AC034236.2-201ENST00000606662 1610 ntBASIC23.79■■□□□ 1.4
COL5A3P25940 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC23.79■■□□□ 1.4
COL5A3P25940 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
COL5A3P25940 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC23.78■■□□□ 1.4
COL5A3P25940 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL5A3P25940 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL5A3P25940 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.78■■□□□ 1.4
COL5A3P25940 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL5A3P25940 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL5A3P25940 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL5A3P25940 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL5A3P25940 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL5A3P25940 AF238378.1-201ENST00000526806 358 ntBASIC23.78■■□□□ 1.4
COL5A3P25940 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL5A3P25940 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC23.78■■□□□ 1.4
COL5A3P25940 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL5A3P25940 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL5A3P25940 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL5A3P25940 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL5A3P25940 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL5A3P25940 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
COL5A3P25940 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL5A3P25940 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
COL5A3P25940 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL5A3P25940 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
COL5A3P25940 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
COL5A3P25940 PPOX-214ENST00000535223 664 ntTSL 3 BASIC23.77■■□□□ 1.4
COL5A3P25940 FICD-205ENST00000552758 603 ntTSL 2 BASIC23.77■■□□□ 1.4
COL5A3P25940 BNIP3P18-201ENST00000593976 575 ntBASIC23.77■■□□□ 1.4
COL5A3P25940 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC23.77■■□□□ 1.4
COL5A3P25940 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL5A3P25940 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL5A3P25940 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL5A3P25940 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC23.77■■□□□ 1.4
COL5A3P25940 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL5A3P25940 CYP51A1P1-201ENST00000492267 1507 ntBASIC23.77■■□□□ 1.4
COL5A3P25940 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC23.77■■□□□ 1.4
COL5A3P25940 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC23.76■■□□□ 1.39
COL5A3P25940 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC23.76■■□□□ 1.39
COL5A3P25940 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC23.76■■□□□ 1.39
COL5A3P25940 GPALPP1-207ENST00000611650 899 ntBASIC23.76■■□□□ 1.39
COL5A3P25940 BX640515.1-201ENST00000617215 977 ntBASIC23.76■■□□□ 1.39
COL5A3P25940 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC23.76■■□□□ 1.39
COL5A3P25940 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL5A3P25940 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL5A3P25940 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL5A3P25940 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL5A3P25940 TEX30-205ENST00000376029 959 ntTSL 2 BASIC23.76■■□□□ 1.39
COL5A3P25940 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL5A3P25940 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC23.76■■□□□ 1.39
COL5A3P25940 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL5A3P25940 PPIE-208ENST00000470213 927 ntTSL 3 BASIC23.76■■□□□ 1.39
COL5A3P25940 CALM3-211ENST00000598871 561 ntTSL 4 BASIC23.76■■□□□ 1.39
COL5A3P25940 AL773604.1-201ENST00000617417 272 ntBASIC23.76■■□□□ 1.39
COL5A3P25940 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL5A3P25940 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL5A3P25940 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL5A3P25940 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL5A3P25940 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL5A3P25940 LSM5-204ENST00000409909 740 ntTSL 2 BASIC23.75■■□□□ 1.39
COL5A3P25940 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC23.75■■□□□ 1.39
COL5A3P25940 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC23.75■■□□□ 1.39
COL5A3P25940 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC23.75■■□□□ 1.39
COL5A3P25940 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC23.75■■□□□ 1.39
COL5A3P25940 AP001005.1-201ENST00000571755 1248 ntBASIC23.75■■□□□ 1.39
COL5A3P25940 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC23.75■■□□□ 1.39
COL5A3P25940 MIR3180-4-201ENST00000582223 153 ntBASIC23.75■■□□□ 1.39
COL5A3P25940 AC005332.3-201ENST00000589904 676 ntBASIC23.75■■□□□ 1.39
COL5A3P25940 AC005336.2-201ENST00000593183 939 ntBASIC23.75■■□□□ 1.39
COL5A3P25940 AC006333.2-201ENST00000607957 2099 ntBASIC23.75■■□□□ 1.39
COL5A3P25940 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
COL5A3P25940 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL5A3P25940 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
COL5A3P25940 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
COL5A3P25940 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL5A3P25940 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL5A3P25940 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
COL5A3P25940 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC23.74■■□□□ 1.39
COL5A3P25940 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL5A3P25940 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL5A3P25940 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL5A3P25940 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL5A3P25940 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL5A3P25940 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL5A3P25940 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL5A3P25940 IL9RP2-201ENST00000423948 1312 ntBASIC23.73■■□□□ 1.39
COL5A3P25940 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC23.73■■□□□ 1.39
COL5A3P25940 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL5A3P25940 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC23.73■■□□□ 1.39
COL5A3P25940 VENTXP7-201ENST00000475503 772 ntBASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms