Protein–RNA interactions for Protein: P12830

CDH1, Cadherin-1, humanhuman

Predictions only

Length 882 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1P12830 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.39■□□□□ 0.54
CDH1P12830 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CDH1P12830 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CDH1P12830 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 FP475955.4-201ENST00000623131 1990 ntBASIC18.39■□□□□ 0.53
CDH1P12830 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CDH1P12830 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CDH1P12830 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.39■□□□□ 0.53
CDH1P12830 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CDH1P12830 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
CDH1P12830 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 FAM207BP-201ENST00000447172 505 ntBASIC18.39■□□□□ 0.53
CDH1P12830 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.39■□□□□ 0.53
CDH1P12830 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH1P12830 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CDH1P12830 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.39■□□□□ 0.53
CDH1P12830 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.39■□□□□ 0.53
CDH1P12830 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH1P12830 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH1P12830 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH1P12830 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.39■□□□□ 0.53
CDH1P12830 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
CDH1P12830 AC007613.1-201ENST00000572811 2597 ntBASIC18.38■□□□□ 0.53
CDH1P12830 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.38■□□□□ 0.53
CDH1P12830 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDH1P12830 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 AC116562.2-201ENST00000507042 360 ntBASIC18.38■□□□□ 0.53
CDH1P12830 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.38■□□□□ 0.53
CDH1P12830 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH1P12830 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CDH1P12830 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.38■□□□□ 0.53
CDH1P12830 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH1P12830 REXO1L10P-201ENST00000615707 1290 ntBASIC18.38■□□□□ 0.53
CDH1P12830 REXO1L12P-201ENST00000622156 912 ntBASIC18.38■□□□□ 0.53
CDH1P12830 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH1P12830 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CDH1P12830 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 AC079598.2-202ENST00000546624 1451 ntBASIC18.38■□□□□ 0.53
CDH1P12830 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH1P12830 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
CDH1P12830 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH1P12830 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH1P12830 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
CDH1P12830 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH1P12830 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 AP003071.4-201ENST00000562276 1284 ntBASIC18.37■□□□□ 0.53
CDH1P12830 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CDH1P12830 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH1P12830 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CDH1P12830 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CDH1P12830 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 FEM1AP3-201ENST00000403722 1741 ntBASIC18.37■□□□□ 0.53
CDH1P12830 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH1P12830 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.37■□□□□ 0.53
CDH1P12830 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CDH1P12830 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH1P12830 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH1P12830 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH1P12830 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH1P12830 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH1P12830 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH1P12830 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH1P12830 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH1P12830 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms