Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
VIMP08670 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 GNAS-203ENST00000306120 1878 ntBASIC18.95■□□□□ 0.62
VIMP08670 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VIMP08670 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.95■□□□□ 0.62
VIMP08670 AL162412.1-201ENST00000567129 965 ntBASIC18.95■□□□□ 0.62
VIMP08670 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
VIMP08670 AL031432.3-201ENST00000607698 485 ntBASIC18.95■□□□□ 0.62
VIMP08670 MYCNOS-205ENST00000641950 531 ntBASIC18.95■□□□□ 0.62
VIMP08670 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VIMP08670 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
VIMP08670 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.95■□□□□ 0.62
VIMP08670 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
VIMP08670 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.95■□□□□ 0.62
VIMP08670 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
VIMP08670 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
VIMP08670 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.94■□□□□ 0.62
VIMP08670 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.94■□□□□ 0.62
VIMP08670 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.94■□□□□ 0.62
VIMP08670 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.94■□□□□ 0.62
VIMP08670 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.94■□□□□ 0.62
VIMP08670 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.94■□□□□ 0.62
VIMP08670 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 AC100791.3-201ENST00000617619 330 ntBASIC18.94■□□□□ 0.62
VIMP08670 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.94■□□□□ 0.62
VIMP08670 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.94■□□□□ 0.62
VIMP08670 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
VIMP08670 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VIMP08670 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.94■□□□□ 0.62
VIMP08670 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
VIMP08670 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.93■□□□□ 0.62
VIMP08670 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.93■□□□□ 0.62
VIMP08670 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.93■□□□□ 0.62
VIMP08670 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.93■□□□□ 0.62
VIMP08670 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
VIMP08670 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
VIMP08670 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
VIMP08670 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
VIMP08670 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VIMP08670 TFP1-202ENST00000475455 1573 ntBASIC18.93■□□□□ 0.62
VIMP08670 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.92■□□□□ 0.62
VIMP08670 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.92■□□□□ 0.62
VIMP08670 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.92■□□□□ 0.62
VIMP08670 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.92■□□□□ 0.62
VIMP08670 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.92■□□□□ 0.62
VIMP08670 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.92■□□□□ 0.62
VIMP08670 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VIMP08670 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.92■□□□□ 0.62
VIMP08670 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms