Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.69■□□□□ 0.9
VTNP04004 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VTNP04004 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VTNP04004 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VTNP04004 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.69■□□□□ 0.9
VTNP04004 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VTNP04004 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VTNP04004 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
VTNP04004 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.68■□□□□ 0.9
VTNP04004 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VTNP04004 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VTNP04004 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VTNP04004 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VTNP04004 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.68■□□□□ 0.9
VTNP04004 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VTNP04004 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
VTNP04004 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
VTNP04004 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.68■□□□□ 0.9
VTNP04004 SPDYE13P-201ENST00000445314 798 ntBASIC20.68■□□□□ 0.9
VTNP04004 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
VTNP04004 SEC1P-202ENST00000473944 940 ntBASIC20.68■□□□□ 0.9
VTNP04004 AL136038.3-201ENST00000561909 1096 ntBASIC20.68■□□□□ 0.9
VTNP04004 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VTNP04004 AC093458.2-201ENST00000623150 629 ntBASIC20.68■□□□□ 0.9
VTNP04004 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.68■□□□□ 0.9
VTNP04004 FP475955.4-201ENST00000623131 1990 ntBASIC20.68■□□□□ 0.9
VTNP04004 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.68■□□□□ 0.9
VTNP04004 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.68■□□□□ 0.9
VTNP04004 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VTNP04004 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.68■□□□□ 0.9
VTNP04004 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VTNP04004 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
VTNP04004 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
VTNP04004 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VTNP04004 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.67■□□□□ 0.9
VTNP04004 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
VTNP04004 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VTNP04004 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VTNP04004 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
VTNP04004 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VTNP04004 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.67■□□□□ 0.9
VTNP04004 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.67■□□□□ 0.9
VTNP04004 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.67■□□□□ 0.9
VTNP04004 AC034232.1-201ENST00000506026 1064 ntBASIC20.67■□□□□ 0.9
VTNP04004 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VTNP04004 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.67■□□□□ 0.9
VTNP04004 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.67■□□□□ 0.9
VTNP04004 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.67■□□□□ 0.9
VTNP04004 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.67■□□□□ 0.9
VTNP04004 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.67■□□□□ 0.9
VTNP04004 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VTNP04004 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VTNP04004 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.67■□□□□ 0.9
VTNP04004 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.67■□□□□ 0.9
VTNP04004 AL109659.2-201ENST00000606809 1674 ntBASIC20.67■□□□□ 0.9
VTNP04004 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VTNP04004 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VTNP04004 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VTNP04004 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
VTNP04004 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VTNP04004 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VTNP04004 HBZP1-201ENST00000354915 429 ntBASIC20.66■□□□□ 0.9
VTNP04004 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.66■□□□□ 0.9
VTNP04004 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.66■□□□□ 0.9
VTNP04004 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.66■□□□□ 0.9
VTNP04004 AC112497.1-201ENST00000624824 639 ntBASIC20.66■□□□□ 0.9
VTNP04004 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VTNP04004 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VTNP04004 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
VTNP04004 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.66■□□□□ 0.9
VTNP04004 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VTNP04004 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.66■□□□□ 0.9
VTNP04004 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VTNP04004 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VTNP04004 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.66■□□□□ 0.9
VTNP04004 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
VTNP04004 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.66■□□□□ 0.9
VTNP04004 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VTNP04004 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VTNP04004 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VTNP04004 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VTNP04004 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VTNP04004 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
VTNP04004 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
VTNP04004 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.65■□□□□ 0.9
VTNP04004 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VTNP04004 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VTNP04004 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VTNP04004 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VTNP04004 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.65■□□□□ 0.9
VTNP04004 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.65■□□□□ 0.9
VTNP04004 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
VTNP04004 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
VTNP04004 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.65■□□□□ 0.9
VTNP04004 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VTNP04004 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VTNP04004 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
VTNP04004 KRT8P32-201ENST00000512863 1461 ntBASIC20.64■□□□□ 0.89
VTNP04004 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VTNP04004 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms