Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC005082.1-201ENST00000413042 2259 ntBASIC16.59■□□□□ 0.25
LMX1BO60663 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1BO60663 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.59■□□□□ 0.25
LMX1BO60663 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1BO60663 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
LMX1BO60663 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1BO60663 AL353807.1-201ENST00000427475 662 ntBASIC16.59■□□□□ 0.25
LMX1BO60663 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
LMX1BO60663 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
LMX1BO60663 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.59■□□□□ 0.25
LMX1BO60663 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1BO60663 Six3os1_6.1-201ENST00000620790 196 ntBASIC16.59■□□□□ 0.25
LMX1BO60663 HTR7P1-201ENST00000538670 1336 ntBASIC16.59■□□□□ 0.25
LMX1BO60663 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
LMX1BO60663 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.59■□□□□ 0.25
LMX1BO60663 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1BO60663 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.59■□□□□ 0.25
LMX1BO60663 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LMX1BO60663 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.59■□□□□ 0.25
LMX1BO60663 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1BO60663 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1BO60663 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1BO60663 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1BO60663 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1BO60663 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1BO60663 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
LMX1BO60663 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1BO60663 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
LMX1BO60663 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1BO60663 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1BO60663 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1BO60663 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
LMX1BO60663 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
LMX1BO60663 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1BO60663 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1BO60663 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1BO60663 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1BO60663 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.58■□□□□ 0.24
LMX1BO60663 KRT16P5-201ENST00000455284 522 ntBASIC16.58■□□□□ 0.24
LMX1BO60663 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.58■□□□□ 0.24
LMX1BO60663 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1BO60663 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.58■□□□□ 0.24
LMX1BO60663 AL353708.3-201ENST00000610272 989 ntBASIC16.58■□□□□ 0.24
LMX1BO60663 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1BO60663 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1BO60663 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
LMX1BO60663 FEM1AP3-201ENST00000403722 1741 ntBASIC16.58■□□□□ 0.24
LMX1BO60663 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1BO60663 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1BO60663 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1BO60663 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LMX1BO60663 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.58■□□□□ 0.24
LMX1BO60663 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
LMX1BO60663 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LMX1BO60663 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.57■□□□□ 0.24
LMX1BO60663 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
LMX1BO60663 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.57■□□□□ 0.24
LMX1BO60663 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
LMX1BO60663 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
LMX1BO60663 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.57■□□□□ 0.24
LMX1BO60663 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.57■□□□□ 0.24
LMX1BO60663 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.57■□□□□ 0.24
LMX1BO60663 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.57■□□□□ 0.24
LMX1BO60663 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.57■□□□□ 0.24
LMX1BO60663 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.57■□□□□ 0.24
LMX1BO60663 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.57■□□□□ 0.24
LMX1BO60663 AF186192.3-201ENST00000583427 947 ntBASIC16.57■□□□□ 0.24
LMX1BO60663 AL445228.2-201ENST00000605589 952 ntBASIC16.57■□□□□ 0.24
LMX1BO60663 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LMX1BO60663 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
LMX1BO60663 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 Z98044.1-201ENST00000632503 1764 ntBASIC16.56■□□□□ 0.24
LMX1BO60663 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms