Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.21■□□□□ 0.67
HOXC11O43248 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC11O43248 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
HOXC11O43248 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
HOXC11O43248 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HOXC11O43248 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.2■□□□□ 0.66
HOXC11O43248 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HOXC11O43248 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.2■□□□□ 0.66
HOXC11O43248 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.2■□□□□ 0.66
HOXC11O43248 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.2■□□□□ 0.66
HOXC11O43248 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
HOXC11O43248 MIR3917-201ENST00000580971 93 ntBASIC19.2■□□□□ 0.66
HOXC11O43248 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HOXC11O43248 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HOXC11O43248 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 KRT8P32-201ENST00000512863 1461 ntBASIC19.2■□□□□ 0.66
HOXC11O43248 AC141586.3-201ENST00000562166 1838 ntBASIC19.2■□□□□ 0.66
HOXC11O43248 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.2■□□□□ 0.66
HOXC11O43248 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.2■□□□□ 0.66
HOXC11O43248 AC008556.1-201ENST00000610908 2040 ntBASIC19.2■□□□□ 0.66
HOXC11O43248 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HOXC11O43248 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.2■□□□□ 0.66
HOXC11O43248 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC11O43248 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
HOXC11O43248 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC11O43248 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC11O43248 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC11O43248 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
HOXC11O43248 HOXB1-202ENST00000577092 1414 ntBASIC19.19■□□□□ 0.66
HOXC11O43248 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXC11O43248 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC11O43248 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
HOXC11O43248 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.19■□□□□ 0.66
HOXC11O43248 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC11O43248 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.19■□□□□ 0.66
HOXC11O43248 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXC11O43248 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC11O43248 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
HOXC11O43248 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC11O43248 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC11O43248 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC11O43248 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXC11O43248 FP475955.4-201ENST00000623131 1990 ntBASIC19.19■□□□□ 0.66
HOXC11O43248 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC11O43248 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HOXC11O43248 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HOXC11O43248 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.18■□□□□ 0.66
HOXC11O43248 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 MIR564-202ENST00000385049 94 ntBASIC19.18■□□□□ 0.66
HOXC11O43248 ATP5G2P1-201ENST00000433580 426 ntBASIC19.18■□□□□ 0.66
HOXC11O43248 HCG4P8-203ENST00000443049 980 ntBASIC19.18■□□□□ 0.66
HOXC11O43248 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.18■□□□□ 0.66
HOXC11O43248 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.18■□□□□ 0.66
HOXC11O43248 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.18■□□□□ 0.66
HOXC11O43248 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.18■□□□□ 0.66
HOXC11O43248 AL157888.1-201ENST00000631930 593 ntBASIC19.18■□□□□ 0.66
HOXC11O43248 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
HOXC11O43248 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.18■□□□□ 0.66
HOXC11O43248 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC11O43248 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC11O43248 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HOXC11O43248 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC11O43248 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC11O43248 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC11O43248 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HOXC11O43248 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.17■□□□□ 0.66
HOXC11O43248 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC11O43248 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms