Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A5A8TX70 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A5A8TX70 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A5A8TX70 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A5A8TX70 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 AC005829.1-201ENST00000570002 483 ntBASIC14.62□□□□□ -0.07
COL6A5A8TX70 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 AP005117.1-201ENST00000584346 1413 ntBASIC14.62□□□□□ -0.07
COL6A5A8TX70 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A5A8TX70 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A5A8TX70 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A5A8TX70 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A5A8TX70 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A5A8TX70 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 AC007967.2-201ENST00000432613 625 ntBASIC14.62□□□□□ -0.07
COL6A5A8TX70 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A5A8TX70 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A5A8TX70 MIR4469-201ENST00000583919 79 ntBASIC14.62□□□□□ -0.07
COL6A5A8TX70 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 GPR32P1-201ENST00000601788 811 ntBASIC14.62□□□□□ -0.07
COL6A5A8TX70 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC14.62□□□□□ -0.07
COL6A5A8TX70 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC14.61□□□□□ -0.07
COL6A5A8TX70 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
COL6A5A8TX70 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 UNC93B6-202ENST00000528242 690 ntBASIC14.61□□□□□ -0.07
COL6A5A8TX70 GZMM-202ENST00000592501 941 ntTSL 3 BASIC14.61□□□□□ -0.07
COL6A5A8TX70 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.61□□□□□ -0.07
COL6A5A8TX70 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A5A8TX70 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A5A8TX70 AC092474.2-201ENST00000424288 719 ntBASIC14.61□□□□□ -0.07
COL6A5A8TX70 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.61□□□□□ -0.07
COL6A5A8TX70 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.61□□□□□ -0.07
COL6A5A8TX70 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC14.61□□□□□ -0.07
COL6A5A8TX70 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC14.61□□□□□ -0.07
COL6A5A8TX70 AJ011932.1-201ENST00000621707 465 ntBASIC14.61□□□□□ -0.07
COL6A5A8TX70 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
COL6A5A8TX70 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 MIR3180-5-201ENST00000583743 153 ntBASIC14.6□□□□□ -0.07
COL6A5A8TX70 MTDHP3-201ENST00000594186 672 ntBASIC14.6□□□□□ -0.07
COL6A5A8TX70 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 AC087641.1-201ENST00000557561 1021 ntBASIC14.6□□□□□ -0.07
COL6A5A8TX70 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.6□□□□□ -0.07
COL6A5A8TX70 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A5A8TX70 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms