Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 AC211486.1-202ENST00000416371 468 ntBASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 AC211476.1-201ENST00000503899 468 ntBASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.92■■□□□ 1.1
TMEM88BA6NKF7 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 AL035633.1-201ENST00000406139 838 ntBASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 AP006288.1-201ENST00000446065 395 ntBASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TMEM88BA6NKF7 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 AC092910.1-201ENST00000482027 1129 ntBASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 RNA5SP415-201ENST00000517246 115 ntBASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 AP001269.4-201ENST00000609611 512 ntBASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 HLA-J-201ENST00000462773 1622 ntBASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TMEM88BA6NKF7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
TMEM88BA6NKF7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 RNA5SP416-201ENST00000516838 111 ntBASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 AC002347.1-201ENST00000569543 541 ntBASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
TMEM88BA6NKF7 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM88BA6NKF7 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM88BA6NKF7 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
TMEM88BA6NKF7 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM88BA6NKF7 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM88BA6NKF7 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC21.88■■□□□ 1.09
TMEM88BA6NKF7 HS6ST1P1-201ENST00000481504 1234 ntBASIC21.88■■□□□ 1.09
TMEM88BA6NKF7 HLA-J-203ENST00000494367 1087 ntBASIC21.88■■□□□ 1.09
TMEM88BA6NKF7 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM88BA6NKF7 COX5A-204ENST00000567270 579 ntTSL 3 BASIC21.88■■□□□ 1.09
TMEM88BA6NKF7 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TMEM88BA6NKF7 AL596442.2-201ENST00000610240 980 ntBASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms