Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 ZNF815P-204ENST00000434898 1737 ntBASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA1Q9Y5H4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 AC106795.1-205ENST00000512851 1056 ntBASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 AL732292.2-201ENST00000609649 430 ntBASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 AC023511.2-201ENST00000618803 211 ntBASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHGA1Q9Y5H4 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 AL022342.1-201ENST00000400363 863 ntBASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 LINC00265-3P-201ENST00000447588 903 ntBASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 AP000867.3-201ENST00000524675 377 ntBASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 AL662844.1-201ENST00000546340 181 ntBASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 AC006538.3-201ENST00000612495 578 ntBASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 KRT8P3-201ENST00000519669 1449 ntBASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 KRT8P7-201ENST00000533003 1432 ntBASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
PCDHGA1Q9Y5H4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 KRT18P31-201ENST00000506277 1292 ntBASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PCDHGA1Q9Y5H4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms