Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 AL390955.1-201ENST00000428694 934 ntBASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 NIFKP4-201ENST00000567275 1192 ntBASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 AP005242.2-201ENST00000580065 1175 ntBASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
PCDHB3Q9Y5E6 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 LIN28AP1-201ENST00000429574 405 ntBASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 AC011506.1-201ENST00000474329 610 ntBASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 C2orf69P3-201ENST00000565542 1120 ntBASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHB3Q9Y5E6 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 AC130371.2-201ENST00000619443 611 ntBASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 AL161938.1-201ENST00000569833 2180 ntBASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
PCDHB3Q9Y5E6 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PCDHB3Q9Y5E6 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms