Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA2Q9Y261 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 AC135050.7-201ENST00000624508 2218 ntBASIC15.28■□□□□ 0.04
FOXA2Q9Y261 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 AP002982.1-201ENST00000492365 877 ntBASIC15.28■□□□□ 0.04
FOXA2Q9Y261 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 RARRES2P10-201ENST00000564312 460 ntBASIC15.28■□□□□ 0.04
FOXA2Q9Y261 AP006294.2-201ENST00000641667 209 ntBASIC15.28■□□□□ 0.04
FOXA2Q9Y261 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 AC005082.1-201ENST00000413042 2259 ntBASIC15.28■□□□□ 0.04
FOXA2Q9Y261 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA2Q9Y261 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 COMP-202ENST00000425807 2292 ntTSL 2 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 HTR7P1-201ENST00000538670 1336 ntBASIC15.27■□□□□ 0.04
FOXA2Q9Y261 ANO7L1-203ENST00000602586 1720 ntBASIC15.27■□□□□ 0.04
FOXA2Q9Y261 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 TK2-204ENST00000525974 1178 ntTSL 2 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA2Q9Y261 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA2Q9Y261 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms