Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.27■□□□□ 0.36
DDX28Q9NUL7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 AC091874.3-201ENST00000512672 1195 ntBASIC17.27■□□□□ 0.36
DDX28Q9NUL7 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 AC142086.2-201ENST00000569753 217 ntBASIC17.27■□□□□ 0.36
DDX28Q9NUL7 AC005829.2-201ENST00000571422 1056 ntBASIC17.27■□□□□ 0.36
DDX28Q9NUL7 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DDX28Q9NUL7 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DDX28Q9NUL7 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 AC009113.1-201ENST00000570267 2443 ntBASIC17.26■□□□□ 0.35
DDX28Q9NUL7 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 AC116351.2-201ENST00000606540 1585 ntBASIC17.26■□□□□ 0.35
DDX28Q9NUL7 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
DDX28Q9NUL7 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 AL390719.1-204ENST00000412397 1219 ntBASIC17.25■□□□□ 0.35
DDX28Q9NUL7 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 MIR4758-201ENST00000577688 71 ntBASIC17.25■□□□□ 0.35
DDX28Q9NUL7 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
DDX28Q9NUL7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms