Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 AFG3L1P-217ENST00000557444 2447 ntBASIC19.54■□□□□ 0.72
HPS4Q9NQG7 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
HPS4Q9NQG7 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 LINC01311-201ENST00000565162 1445 ntBASIC19.53■□□□□ 0.72
HPS4Q9NQG7 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 AL121894.2-201ENST00000602977 491 ntBASIC19.53■□□□□ 0.72
HPS4Q9NQG7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS4Q9NQG7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 TSPY21P-201ENST00000433481 731 ntBASIC19.52■□□□□ 0.72
HPS4Q9NQG7 DUSP5P1-201ENST00000441325 1139 ntBASIC19.52■□□□□ 0.72
HPS4Q9NQG7 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 SPDYE13P-201ENST00000445314 798 ntBASIC19.52■□□□□ 0.72
HPS4Q9NQG7 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 AC069148.1-201ENST00000608741 768 ntBASIC19.52■□□□□ 0.72
HPS4Q9NQG7 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS4Q9NQG7 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
HPS4Q9NQG7 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HPS4Q9NQG7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.52■□□□□ 0.71
HPS4Q9NQG7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.52■□□□□ 0.71
HPS4Q9NQG7 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
HPS4Q9NQG7 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.52■□□□□ 0.71
HPS4Q9NQG7 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS4Q9NQG7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
HPS4Q9NQG7 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS4Q9NQG7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS4Q9NQG7 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HPS4Q9NQG7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS4Q9NQG7 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.5■□□□□ 0.71
HPS4Q9NQG7 GPAT2P1-201ENST00000444924 1672 ntBASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms