Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 SLC25A3P1-201ENST00000443844 931 ntBASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 FAM87A-204ENST00000613235 858 ntBASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 KRT8P3-201ENST00000519669 1449 ntBASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 AC087289.5-201ENST00000586076 3175 ntBASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.72■□□□□ 0.59
TRIM39Q9HCM9 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 HMGA1P5-201ENST00000412453 271 ntBASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 AP003041.3-201ENST00000527151 707 ntBASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM39Q9HCM9 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.71■□□□□ 0.58
TRIM39Q9HCM9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 AC113347.1-201ENST00000413321 391 ntBASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TRIM39Q9HCM9 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TRIM39Q9HCM9 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms