Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 KRT16P1-201ENST00000399124 1418 ntBASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 AL031985.4-201ENST00000642138 673 ntBASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM54Q9BYV2 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 RPS2P4-201ENST00000476944 856 ntBASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 AF186192.3-201ENST00000583427 947 ntBASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 CR392000.1-201ENST00000624770 1228 ntBASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM54Q9BYV2 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRIM54Q9BYV2 KRT8P41-201ENST00000533985 1514 ntBASIC18.64■□□□□ 0.58
TRIM54Q9BYV2 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
TRIM54Q9BYV2 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 PRORSD1P-201ENST00000295112 541 ntBASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 AC004980.1-204ENST00000429707 299 ntBASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 UBE2SP1-201ENST00000450587 669 ntBASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 Z85996.1-201ENST00000494644 937 ntBASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM54Q9BYV2 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM54Q9BYV2 AL049812.1-201ENST00000432563 2267 ntBASIC18.63■□□□□ 0.57
TRIM54Q9BYV2 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM54Q9BYV2 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM54Q9BYV2 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM54Q9BYV2 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM54Q9BYV2 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM54Q9BYV2 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM54Q9BYV2 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM54Q9BYV2 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM54Q9BYV2 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms