Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 AC126763.1-201ENST00000552015 2118 ntBASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28BQ9BUN5 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 AF201337.1-201ENST00000520239 748 ntBASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 AC105036.2-201ENST00000569468 176 ntBASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 AC090340.1-201ENST00000620778 4980 ntBASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
CCDC28BQ9BUN5 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 AC004911.1-201ENST00000416316 871 ntBASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 AC099398.1-201ENST00000567919 2776 ntBASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC28BQ9BUN5 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms