Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.51■□□□□ 0.23
COL12A1Q99715 AC093909.1-201ENST00000504731 1122 ntBASIC16.51■□□□□ 0.23
COL12A1Q99715 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.51■□□□□ 0.23
COL12A1Q99715 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.51■□□□□ 0.23
COL12A1Q99715 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.51■□□□□ 0.23
COL12A1Q99715 AC090616.6-201ENST00000582640 721 ntBASIC16.51■□□□□ 0.23
COL12A1Q99715 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.51■□□□□ 0.23
COL12A1Q99715 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC16.51■□□□□ 0.23
COL12A1Q99715 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC16.51■□□□□ 0.23
COL12A1Q99715 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL12A1Q99715 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL12A1Q99715 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL12A1Q99715 AL049796.1-201ENST00000565336 1766 ntBASIC16.5■□□□□ 0.23
COL12A1Q99715 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL12A1Q99715 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.5■□□□□ 0.23
COL12A1Q99715 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.5■□□□□ 0.23
COL12A1Q99715 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL12A1Q99715 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC16.5■□□□□ 0.23
COL12A1Q99715 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL12A1Q99715 AC007225.1-201ENST00000566331 1836 ntBASIC16.5■□□□□ 0.23
COL12A1Q99715 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL12A1Q99715 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL12A1Q99715 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC16.5■□□□□ 0.23
COL12A1Q99715 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL12A1Q99715 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL12A1Q99715 AC004832.2-201ENST00000426397 482 ntBASIC16.5■□□□□ 0.23
COL12A1Q99715 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL12A1Q99715 AC012640.2-201ENST00000561606 901 ntBASIC16.5■□□□□ 0.23
COL12A1Q99715 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL12A1Q99715 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL12A1Q99715 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16.49■□□□□ 0.23
COL12A1Q99715 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.49■□□□□ 0.23
COL12A1Q99715 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
COL12A1Q99715 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.49■□□□□ 0.23
COL12A1Q99715 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.49■□□□□ 0.23
COL12A1Q99715 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.49■□□□□ 0.23
COL12A1Q99715 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL12A1Q99715 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.49■□□□□ 0.23
COL12A1Q99715 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
COL12A1Q99715 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.49■□□□□ 0.23
COL12A1Q99715 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 CNN2P11-201ENST00000429351 262 ntBASIC16.49■□□□□ 0.23
COL12A1Q99715 MINOS1P3-201ENST00000457048 203 ntBASIC16.49■□□□□ 0.23
COL12A1Q99715 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.49■□□□□ 0.23
COL12A1Q99715 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
COL12A1Q99715 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL12A1Q99715 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.49■□□□□ 0.23
COL12A1Q99715 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL12A1Q99715 KRT18P28-201ENST00000453838 1332 ntBASIC16.49■□□□□ 0.23
COL12A1Q99715 LSR-203ENST00000360798 1963 ntTSL 2 BASIC16.49■□□□□ 0.23
COL12A1Q99715 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL12A1Q99715 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.49■□□□□ 0.23
COL12A1Q99715 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.49■□□□□ 0.23
COL12A1Q99715 AC106028.4-201ENST00000614509 607 ntBASIC16.49■□□□□ 0.23
COL12A1Q99715 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
COL12A1Q99715 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.48■□□□□ 0.23
COL12A1Q99715 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.48■□□□□ 0.23
COL12A1Q99715 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
COL12A1Q99715 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL12A1Q99715 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.48■□□□□ 0.23
COL12A1Q99715 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.48■□□□□ 0.23
COL12A1Q99715 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.48■□□□□ 0.23
COL12A1Q99715 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
COL12A1Q99715 AL645939.2-201ENST00000427340 991 ntBASIC16.48■□□□□ 0.23
COL12A1Q99715 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.48■□□□□ 0.23
COL12A1Q99715 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.48■□□□□ 0.23
COL12A1Q99715 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL12A1Q99715 AC112907.3-201ENST00000577781 2400 ntBASIC16.48■□□□□ 0.23
COL12A1Q99715 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
COL12A1Q99715 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC16.47■□□□□ 0.23
COL12A1Q99715 AP001271.2-201ENST00000624018 1556 ntBASIC16.47■□□□□ 0.23
COL12A1Q99715 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
COL12A1Q99715 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.47■□□□□ 0.23
COL12A1Q99715 MIR3917-201ENST00000580971 93 ntBASIC16.47■□□□□ 0.23
COL12A1Q99715 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms