Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 AL391422.3-201ENST00000603791 2761 ntBASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CNTNAP3BQ96NU0 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 TFP1-202ENST00000475455 1573 ntBASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 RNF126P1-202ENST00000569893 925 ntBASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 FAM197Y3-203ENST00000618346 717 ntBASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CNTNAP3BQ96NU0 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CNTNAP3BQ96NU0 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CNTNAP3BQ96NU0 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
CNTNAP3BQ96NU0 AC233702.3-201ENST00000578656 1387 ntBASIC18.02■□□□□ 0.47
CNTNAP3BQ96NU0 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CNTNAP3BQ96NU0 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 MIR770-201ENST00000390219 98 ntBASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 MIR1199-201ENST00000621445 119 ntBASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.01■□□□□ 0.47
CNTNAP3BQ96NU0 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 AC007952.6-201ENST00000573168 2673 ntBASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 AC003957.1-201ENST00000625108 2673 ntBASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 NUS1P2-201ENST00000417358 873 ntBASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 Z69720.1-201ENST00000601483 472 ntBASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 AL596442.2-201ENST00000610240 980 ntBASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18■□□□□ 0.47
CNTNAP3BQ96NU0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms