Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC092329.2-201ENST00000598402 547 ntBASIC19.22■□□□□ 0.67
CHFRQ96EP1 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CHFRQ96EP1 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CHFRQ96EP1 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.22■□□□□ 0.67
CHFRQ96EP1 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.21■□□□□ 0.67
CHFRQ96EP1 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.21■□□□□ 0.67
CHFRQ96EP1 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.21■□□□□ 0.67
CHFRQ96EP1 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CHFRQ96EP1 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 AC246785.2-201ENST00000432512 513 ntBASIC19.21■□□□□ 0.67
CHFRQ96EP1 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.21■□□□□ 0.67
CHFRQ96EP1 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 UNC93B7-201ENST00000509439 705 ntBASIC19.21■□□□□ 0.67
CHFRQ96EP1 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
CHFRQ96EP1 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.21■□□□□ 0.67
CHFRQ96EP1 MIR3917-201ENST00000580971 93 ntBASIC19.21■□□□□ 0.67
CHFRQ96EP1 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CHFRQ96EP1 LINC01521-201ENST00000504184 1943 ntBASIC19.21■□□□□ 0.67
CHFRQ96EP1 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHFRQ96EP1 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CHFRQ96EP1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.66
CHFRQ96EP1 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 Z82202.1-201ENST00000623446 1880 ntBASIC19.2■□□□□ 0.66
CHFRQ96EP1 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 BX276092.5-203ENST00000456199 560 ntBASIC19.2■□□□□ 0.66
CHFRQ96EP1 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 MIR3652-201ENST00000579335 131 ntBASIC19.2■□□□□ 0.66
CHFRQ96EP1 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 AL691432.3-201ENST00000621860 400 ntBASIC19.2■□□□□ 0.66
CHFRQ96EP1 AC112497.1-201ENST00000624824 639 ntBASIC19.2■□□□□ 0.66
CHFRQ96EP1 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 PCDHAC2-203ENST00000615316 3011 ntBASIC19.2■□□□□ 0.66
CHFRQ96EP1 AL391807.1-203ENST00000604392 2365 ntBASIC19.2■□□□□ 0.66
CHFRQ96EP1 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHFRQ96EP1 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CHFRQ96EP1 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.19■□□□□ 0.66
CHFRQ96EP1 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHFRQ96EP1 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms