Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGB4Q8WW32 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 KRT8P3-201ENST00000519669 1449 ntBASIC18.91■□□□□ 0.62
HMGB4Q8WW32 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 AL162741.1-201ENST00000565563 1558 ntBASIC18.91■□□□□ 0.62
HMGB4Q8WW32 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 AC079602.3-201ENST00000623931 403 ntBASIC18.91■□□□□ 0.62
HMGB4Q8WW32 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGB4Q8WW32 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGB4Q8WW32 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.89■□□□□ 0.62
HMGB4Q8WW32 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 Z82202.1-201ENST00000623446 1880 ntBASIC18.89■□□□□ 0.61
HMGB4Q8WW32 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 MIR3180-1-201ENST00000580374 94 ntBASIC18.89■□□□□ 0.61
HMGB4Q8WW32 RN7SL510P-201ENST00000581311 263 ntBASIC18.89■□□□□ 0.61
HMGB4Q8WW32 MIR3180-3-201ENST00000584616 94 ntBASIC18.89■□□□□ 0.61
HMGB4Q8WW32 AP002414.4-201ENST00000589764 1148 ntBASIC18.89■□□□□ 0.61
HMGB4Q8WW32 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGB4Q8WW32 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms