Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 AP003041.3-201ENST00000527151 707 ntBASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 CYP2D8P-201ENST00000433633 1490 ntBASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHROOM3Q8TF72 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 NTF6B-201ENST00000591913 560 ntBASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 MIR1238-201ENST00000408483 83 ntBASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM3Q8TF72 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 AC005521.1-201ENST00000393351 872 ntBASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 Z98044.1-201ENST00000632503 1764 ntBASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 AC093525.10-201ENST00000625130 1569 ntBASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.23■□□□□ 0.67
SHROOM3Q8TF72 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM3Q8TF72 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms