Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HDDC3Q8N4P3 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 KRT8P3-201ENST00000519669 1449 ntBASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 MCCD1P1-208ENST00000445732 328 ntBASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HDDC3Q8N4P3 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 AC036111.1-201ENST00000533973 1582 ntBASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 TEX21P-204ENST00000641479 1693 ntBASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 STARP1-201ENST00000397973 869 ntBASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 AC112907.2-201ENST00000448639 330 ntBASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 ZNF444P1-201ENST00000559497 298 ntBASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDDC3Q8N4P3 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms