Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC23.14■■□□□ 1.3
USP48Q86UV5 MCC-208ENST00000514701 2855 ntTSL 2 BASIC23.14■■□□□ 1.29
USP48Q86UV5 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
USP48Q86UV5 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
USP48Q86UV5 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
USP48Q86UV5 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC23.14■■□□□ 1.29
USP48Q86UV5 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC23.14■■□□□ 1.29
USP48Q86UV5 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC23.14■■□□□ 1.29
USP48Q86UV5 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC23.14■■□□□ 1.29
USP48Q86UV5 BCL10-202ENST00000620248 774 ntTSL 5 BASIC23.14■■□□□ 1.29
USP48Q86UV5 HYMAI.1-201ENST00000620949 238 ntBASIC23.14■■□□□ 1.29
USP48Q86UV5 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
USP48Q86UV5 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
USP48Q86UV5 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
USP48Q86UV5 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
USP48Q86UV5 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC23.14■■□□□ 1.29
USP48Q86UV5 PWWP2AP1-201ENST00000429776 2273 ntBASIC23.13■■□□□ 1.29
USP48Q86UV5 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
USP48Q86UV5 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP48Q86UV5 AC004408.2-201ENST00000623613 2777 ntBASIC23.13■■□□□ 1.29
USP48Q86UV5 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC23.13■■□□□ 1.29
USP48Q86UV5 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP48Q86UV5 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP48Q86UV5 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP48Q86UV5 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC23.13■■□□□ 1.29
USP48Q86UV5 PHGDH-210ENST00000641115 1638 ntBASIC23.13■■□□□ 1.29
USP48Q86UV5 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP48Q86UV5 CA15P1-201ENST00000481698 905 ntBASIC23.13■■□□□ 1.29
USP48Q86UV5 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC23.13■■□□□ 1.29
USP48Q86UV5 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
USP48Q86UV5 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC23.13■■□□□ 1.29
USP48Q86UV5 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
USP48Q86UV5 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC23.13■■□□□ 1.29
USP48Q86UV5 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP48Q86UV5 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP48Q86UV5 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP48Q86UV5 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP48Q86UV5 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
USP48Q86UV5 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
USP48Q86UV5 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
USP48Q86UV5 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
USP48Q86UV5 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
USP48Q86UV5 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC23.12■■□□□ 1.29
USP48Q86UV5 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC23.12■■□□□ 1.29
USP48Q86UV5 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
USP48Q86UV5 LY6E-213ENST00000522528 606 ntTSL 3 BASIC23.12■■□□□ 1.29
USP48Q86UV5 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
USP48Q86UV5 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
USP48Q86UV5 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
USP48Q86UV5 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
USP48Q86UV5 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC23.11■■□□□ 1.29
USP48Q86UV5 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
USP48Q86UV5 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC23.11■■□□□ 1.29
USP48Q86UV5 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
USP48Q86UV5 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
USP48Q86UV5 LINC01311-201ENST00000565162 1445 ntBASIC23.11■■□□□ 1.29
USP48Q86UV5 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC23.11■■□□□ 1.29
USP48Q86UV5 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
USP48Q86UV5 AP000347.1-202ENST00000435868 847 ntBASIC23.11■■□□□ 1.29
USP48Q86UV5 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC23.11■■□□□ 1.29
USP48Q86UV5 CD37-204ENST00000535669 1674 ntTSL 2 BASIC23.11■■□□□ 1.29
USP48Q86UV5 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
USP48Q86UV5 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
USP48Q86UV5 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC23.11■■□□□ 1.29
USP48Q86UV5 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
USP48Q86UV5 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
USP48Q86UV5 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
USP48Q86UV5 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC23.1■■□□□ 1.29
USP48Q86UV5 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
USP48Q86UV5 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC23.1■■□□□ 1.29
USP48Q86UV5 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
USP48Q86UV5 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
USP48Q86UV5 PVRIG2P-201ENST00000435460 978 ntBASIC23.1■■□□□ 1.29
USP48Q86UV5 FDX1P1-201ENST00000449115 551 ntBASIC23.1■■□□□ 1.29
USP48Q86UV5 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC23.1■■□□□ 1.29
USP48Q86UV5 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC23.1■■□□□ 1.29
USP48Q86UV5 RN7SL510P-201ENST00000581311 263 ntBASIC23.1■■□□□ 1.29
USP48Q86UV5 AC092119.3-201ENST00000612618 583 ntBASIC23.1■■□□□ 1.29
USP48Q86UV5 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
USP48Q86UV5 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
USP48Q86UV5 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
USP48Q86UV5 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC23.09■■□□□ 1.29
USP48Q86UV5 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
USP48Q86UV5 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
USP48Q86UV5 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
USP48Q86UV5 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
USP48Q86UV5 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC23.09■■□□□ 1.29
USP48Q86UV5 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC23.09■■□□□ 1.29
USP48Q86UV5 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC23.09■■□□□ 1.29
USP48Q86UV5 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
USP48Q86UV5 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC23.09■■□□□ 1.29
USP48Q86UV5 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
USP48Q86UV5 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC23.09■■□□□ 1.29
USP48Q86UV5 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
USP48Q86UV5 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
USP48Q86UV5 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
USP48Q86UV5 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC23.09■■□□□ 1.29
USP48Q86UV5 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
USP48Q86UV5 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC23.09■■□□□ 1.29
USP48Q86UV5 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms