Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 AC010240.3-201ENST00000607688 395 ntBASIC20.03■□□□□ 0.8
CHD9Q3L8U1 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 MCCD1P1-208ENST00000445732 328 ntBASIC20.02■□□□□ 0.8
CHD9Q3L8U1 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 AC007375.3-201ENST00000600936 2314 ntBASIC20.02■□□□□ 0.8
CHD9Q3L8U1 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHD9Q3L8U1 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CHD9Q3L8U1 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.02■□□□□ 0.79
CHD9Q3L8U1 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 HOXB1-202ENST00000577092 1414 ntBASIC20.01■□□□□ 0.79
CHD9Q3L8U1 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 AC005332.3-201ENST00000589904 676 ntBASIC20.01■□□□□ 0.79
CHD9Q3L8U1 AL049840.3-201ENST00000602669 611 ntBASIC20.01■□□□□ 0.79
CHD9Q3L8U1 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
CHD9Q3L8U1 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20■□□□□ 0.79
CHD9Q3L8U1 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 TREX1-205ENST00000625293 1783 ntBASIC20■□□□□ 0.79
CHD9Q3L8U1 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20■□□□□ 0.79
CHD9Q3L8U1 AC073648.2-201ENST00000510116 352 ntBASIC20■□□□□ 0.79
CHD9Q3L8U1 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20■□□□□ 0.79
CHD9Q3L8U1 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20■□□□□ 0.79
CHD9Q3L8U1 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CHD9Q3L8U1 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20■□□□□ 0.79
CHD9Q3L8U1 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CHD9Q3L8U1 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CHD9Q3L8U1 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20■□□□□ 0.79
CHD9Q3L8U1 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20■□□□□ 0.79
CHD9Q3L8U1 CD63-204ENST00000546939 779 ntTSL 3 BASIC20■□□□□ 0.79
CHD9Q3L8U1 AC140113.2-201ENST00000604370 208 ntBASIC20■□□□□ 0.79
CHD9Q3L8U1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CHD9Q3L8U1 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.99■□□□□ 0.79
CHD9Q3L8U1 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHD9Q3L8U1 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CHD9Q3L8U1 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms