Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC006333.2-201ENST00000607957 2099 ntBASIC17.11■□□□□ 0.33
FOXF1Q12946 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.11■□□□□ 0.33
FOXF1Q12946 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
FOXF1Q12946 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXF1Q12946 BX323043.1-201ENST00000641006 1765 ntBASIC17.11■□□□□ 0.33
FOXF1Q12946 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXF1Q12946 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXF1Q12946 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.11■□□□□ 0.33
FOXF1Q12946 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.11■□□□□ 0.33
FOXF1Q12946 AC010947.1-201ENST00000623454 693 ntBASIC17.11■□□□□ 0.33
FOXF1Q12946 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
FOXF1Q12946 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
FOXF1Q12946 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
FOXF1Q12946 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.11■□□□□ 0.33
FOXF1Q12946 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.11■□□□□ 0.33
FOXF1Q12946 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
FOXF1Q12946 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXF1Q12946 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
FOXF1Q12946 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
FOXF1Q12946 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
FOXF1Q12946 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.1■□□□□ 0.33
FOXF1Q12946 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.1■□□□□ 0.33
FOXF1Q12946 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.1■□□□□ 0.33
FOXF1Q12946 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
FOXF1Q12946 SLC25A1P2-201ENST00000430693 912 ntBASIC17.1■□□□□ 0.33
FOXF1Q12946 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.1■□□□□ 0.33
FOXF1Q12946 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.1■□□□□ 0.33
FOXF1Q12946 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.1■□□□□ 0.33
FOXF1Q12946 AC073912.3-201ENST00000624414 853 ntBASIC17.1■□□□□ 0.33
FOXF1Q12946 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.1■□□□□ 0.33
FOXF1Q12946 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXF1Q12946 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
FOXF1Q12946 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.09■□□□□ 0.33
FOXF1Q12946 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
FOXF1Q12946 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXF1Q12946 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
FOXF1Q12946 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
FOXF1Q12946 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.09■□□□□ 0.33
FOXF1Q12946 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.09■□□□□ 0.33
FOXF1Q12946 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.09■□□□□ 0.33
FOXF1Q12946 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
FOXF1Q12946 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.09■□□□□ 0.33
FOXF1Q12946 AC008622.2-201ENST00000617006 1229 ntBASIC17.09■□□□□ 0.33
FOXF1Q12946 AC083906.6-201ENST00000641366 219 ntBASIC17.09■□□□□ 0.33
FOXF1Q12946 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
FOXF1Q12946 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
FOXF1Q12946 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXF1Q12946 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
FOXF1Q12946 AL512353.2-201ENST00000448759 1962 ntBASIC17.09■□□□□ 0.33
FOXF1Q12946 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
FOXF1Q12946 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
FOXF1Q12946 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXF1Q12946 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
FOXF1Q12946 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
FOXF1Q12946 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.08■□□□□ 0.33
FOXF1Q12946 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
FOXF1Q12946 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
FOXF1Q12946 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
FOXF1Q12946 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
FOXF1Q12946 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
FOXF1Q12946 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXF1Q12946 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXF1Q12946 TSPY14P-201ENST00000303979 915 ntBASIC17.08■□□□□ 0.32
FOXF1Q12946 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.08■□□□□ 0.32
FOXF1Q12946 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
FOXF1Q12946 CCR12P-201ENST00000446203 998 ntBASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms