Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HDAC4P56524 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.74■□□□□ 0.75
HDAC4P56524 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
HDAC4P56524 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HDAC4P56524 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.74■□□□□ 0.75
HDAC4P56524 MFAP1P1-201ENST00000442257 1255 ntBASIC19.74■□□□□ 0.75
HDAC4P56524 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
HDAC4P56524 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.74■□□□□ 0.75
HDAC4P56524 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.74■□□□□ 0.75
HDAC4P56524 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.74■□□□□ 0.75
HDAC4P56524 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HDAC4P56524 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.74■□□□□ 0.75
HDAC4P56524 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC4P56524 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.73■□□□□ 0.75
HDAC4P56524 AC079598.2-202ENST00000546624 1451 ntBASIC19.73■□□□□ 0.75
HDAC4P56524 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC4P56524 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC4P56524 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC4P56524 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
HDAC4P56524 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC4P56524 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC4P56524 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
HDAC4P56524 AL596275.1-201ENST00000423464 877 ntBASIC19.73■□□□□ 0.75
HDAC4P56524 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.73■□□□□ 0.75
HDAC4P56524 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.73■□□□□ 0.75
HDAC4P56524 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
HDAC4P56524 AL355075.4-201ENST00000554988 638 ntBASIC19.73■□□□□ 0.75
HDAC4P56524 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.73■□□□□ 0.75
HDAC4P56524 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.73■□□□□ 0.75
HDAC4P56524 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC4P56524 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.73■□□□□ 0.75
HDAC4P56524 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC4P56524 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC4P56524 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.73■□□□□ 0.75
HDAC4P56524 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.73■□□□□ 0.75
HDAC4P56524 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC4P56524 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HDAC4P56524 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
HDAC4P56524 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HDAC4P56524 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HDAC4P56524 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
HDAC4P56524 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.72■□□□□ 0.75
HDAC4P56524 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.72■□□□□ 0.75
HDAC4P56524 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.72■□□□□ 0.75
HDAC4P56524 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HDAC4P56524 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HDAC4P56524 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 TSPY15P-201ENST00000457163 923 ntBASIC19.72■□□□□ 0.75
HDAC4P56524 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
HDAC4P56524 KRT8P3-201ENST00000519669 1449 ntBASIC19.72■□□□□ 0.75
HDAC4P56524 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.72■□□□□ 0.75
HDAC4P56524 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 KRT17P2-201ENST00000300992 1314 ntBASIC19.72■□□□□ 0.75
HDAC4P56524 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
HDAC4P56524 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC4P56524 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC4P56524 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.71■□□□□ 0.75
HDAC4P56524 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.71■□□□□ 0.75
HDAC4P56524 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.71■□□□□ 0.75
HDAC4P56524 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HDAC4P56524 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC4P56524 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC4P56524 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.71■□□□□ 0.75
HDAC4P56524 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.71■□□□□ 0.75
HDAC4P56524 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.71■□□□□ 0.75
HDAC4P56524 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.71■□□□□ 0.75
HDAC4P56524 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.71■□□□□ 0.75
HDAC4P56524 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC4P56524 AP000525.1-201ENST00000608286 694 ntBASIC19.71■□□□□ 0.75
HDAC4P56524 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC4P56524 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.71■□□□□ 0.75
HDAC4P56524 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC4P56524 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC4P56524 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
HDAC4P56524 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC4P56524 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms