Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIM2P55344 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.94■□□□□ 0.46
LIM2P55344 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
LIM2P55344 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIM2P55344 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.94■□□□□ 0.46
LIM2P55344 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.93■□□□□ 0.46
LIM2P55344 AL138781.2-201ENST00000617896 1843 ntBASIC17.93■□□□□ 0.46
LIM2P55344 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
LIM2P55344 AC120498.9-201ENST00000339021 3867 ntBASIC17.93■□□□□ 0.46
LIM2P55344 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.93■□□□□ 0.46
LIM2P55344 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LIM2P55344 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LIM2P55344 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.93■□□□□ 0.46
LIM2P55344 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.93■□□□□ 0.46
LIM2P55344 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.93■□□□□ 0.46
LIM2P55344 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.93■□□□□ 0.46
LIM2P55344 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.93■□□□□ 0.46
LIM2P55344 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.93■□□□□ 0.46
LIM2P55344 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LIM2P55344 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.93■□□□□ 0.46
LIM2P55344 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIM2P55344 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.92■□□□□ 0.46
LIM2P55344 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.92■□□□□ 0.46
LIM2P55344 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LIM2P55344 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.92■□□□□ 0.46
LIM2P55344 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.92■□□□□ 0.46
LIM2P55344 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.92■□□□□ 0.46
LIM2P55344 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
LIM2P55344 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.92■□□□□ 0.46
LIM2P55344 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.92■□□□□ 0.46
LIM2P55344 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.92■□□□□ 0.46
LIM2P55344 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.92■□□□□ 0.46
LIM2P55344 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LIM2P55344 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.92■□□□□ 0.46
LIM2P55344 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.92■□□□□ 0.46
LIM2P55344 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
LIM2P55344 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.92■□□□□ 0.46
LIM2P55344 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIM2P55344 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.92■□□□□ 0.46
LIM2P55344 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.91■□□□□ 0.46
LIM2P55344 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
LIM2P55344 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.91■□□□□ 0.46
LIM2P55344 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
LIM2P55344 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.91■□□□□ 0.46
LIM2P55344 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.91■□□□□ 0.46
LIM2P55344 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 BX088651.1-201ENST00000540551 451 ntBASIC17.91■□□□□ 0.46
LIM2P55344 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.91■□□□□ 0.46
LIM2P55344 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.91■□□□□ 0.46
LIM2P55344 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.91■□□□□ 0.46
LIM2P55344 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.91■□□□□ 0.46
LIM2P55344 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.91■□□□□ 0.46
LIM2P55344 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.91■□□□□ 0.46
LIM2P55344 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIM2P55344 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms