Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 NBPF21P-201ENST00000425093 1451 ntBASIC19.81■□□□□ 0.76
LIG3P49916 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.81■□□□□ 0.76
LIG3P49916 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
LIG3P49916 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LIG3P49916 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.81■□□□□ 0.76
LIG3P49916 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LIG3P49916 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
LIG3P49916 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.81■□□□□ 0.76
LIG3P49916 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.81■□□□□ 0.76
LIG3P49916 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.81■□□□□ 0.76
LIG3P49916 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
LIG3P49916 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.81■□□□□ 0.76
LIG3P49916 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.81■□□□□ 0.76
LIG3P49916 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LIG3P49916 BX119927.1-201ENST00000636596 1552 ntBASIC19.81■□□□□ 0.76
LIG3P49916 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
LIG3P49916 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.8■□□□□ 0.76
LIG3P49916 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.8■□□□□ 0.76
LIG3P49916 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.8■□□□□ 0.76
LIG3P49916 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
LIG3P49916 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.8■□□□□ 0.76
LIG3P49916 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.8■□□□□ 0.76
LIG3P49916 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.8■□□□□ 0.76
LIG3P49916 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.8■□□□□ 0.76
LIG3P49916 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
LIG3P49916 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG3P49916 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
LIG3P49916 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.79■□□□□ 0.76
LIG3P49916 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.79■□□□□ 0.76
LIG3P49916 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.79■□□□□ 0.76
LIG3P49916 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LIG3P49916 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LIG3P49916 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
LIG3P49916 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.79■□□□□ 0.76
LIG3P49916 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.79■□□□□ 0.76
LIG3P49916 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.79■□□□□ 0.76
LIG3P49916 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.79■□□□□ 0.76
LIG3P49916 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.79■□□□□ 0.76
LIG3P49916 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
LIG3P49916 AL691432.2-201ENST00000607222 2038 ntBASIC19.79■□□□□ 0.76
LIG3P49916 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.79■□□□□ 0.76
LIG3P49916 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG3P49916 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.78■□□□□ 0.76
LIG3P49916 AC116351.2-201ENST00000606540 1585 ntBASIC19.78■□□□□ 0.76
LIG3P49916 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.78■□□□□ 0.76
LIG3P49916 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.78■□□□□ 0.76
LIG3P49916 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.78■□□□□ 0.76
LIG3P49916 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 PHGDH-210ENST00000641115 1638 ntBASIC19.78■□□□□ 0.76
LIG3P49916 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.78■□□□□ 0.76
LIG3P49916 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 Z99916.2-201ENST00000604037 246 ntBASIC19.78■□□□□ 0.76
LIG3P49916 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.78■□□□□ 0.76
LIG3P49916 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.78■□□□□ 0.76
LIG3P49916 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIG3P49916 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms