Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HNF4AP41235 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
HNF4AP41235 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HNF4AP41235 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.33■□□□□ 0.52
HNF4AP41235 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HNF4AP41235 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HNF4AP41235 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.33■□□□□ 0.52
HNF4AP41235 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HNF4AP41235 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HNF4AP41235 PRSS44-201ENST00000515154 1146 ntBASIC18.33■□□□□ 0.52
HNF4AP41235 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.33■□□□□ 0.52
HNF4AP41235 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.33■□□□□ 0.52
HNF4AP41235 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.33■□□□□ 0.52
HNF4AP41235 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.33■□□□□ 0.52
HNF4AP41235 AL031985.4-201ENST00000642138 673 ntBASIC18.33■□□□□ 0.52
HNF4AP41235 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HNF4AP41235 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HNF4AP41235 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.33■□□□□ 0.52
HNF4AP41235 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
HNF4AP41235 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HNF4AP41235 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.33■□□□□ 0.52
HNF4AP41235 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HNF4AP41235 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HNF4AP41235 AC026471.1-201ENST00000564629 3026 ntBASIC18.33■□□□□ 0.52
HNF4AP41235 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.32■□□□□ 0.52
HNF4AP41235 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.32■□□□□ 0.52
HNF4AP41235 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
HNF4AP41235 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 TSPY7P-201ENST00000431358 1114 ntBASIC18.32■□□□□ 0.52
HNF4AP41235 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.32■□□□□ 0.52
HNF4AP41235 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.32■□□□□ 0.52
HNF4AP41235 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.32■□□□□ 0.52
HNF4AP41235 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.32■□□□□ 0.52
HNF4AP41235 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HNF4AP41235 AC093525.10-201ENST00000625130 1569 ntBASIC18.32■□□□□ 0.52
HNF4AP41235 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.32■□□□□ 0.52
HNF4AP41235 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HNF4AP41235 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HNF4AP41235 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
HNF4AP41235 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
HNF4AP41235 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HNF4AP41235 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.31■□□□□ 0.52
HNF4AP41235 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 AL138781.2-201ENST00000617896 1843 ntBASIC18.31■□□□□ 0.52
HNF4AP41235 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.31■□□□□ 0.52
HNF4AP41235 AC004951.3-201ENST00000418645 1148 ntBASIC18.31■□□□□ 0.52
HNF4AP41235 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.31■□□□□ 0.52
HNF4AP41235 SNORA78-201ENST00000459373 127 ntBASIC18.31■□□□□ 0.52
HNF4AP41235 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.31■□□□□ 0.52
HNF4AP41235 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
HNF4AP41235 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HNF4AP41235 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HNF4AP41235 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 KRT8P11-201ENST00000409686 1436 ntBASIC18.31■□□□□ 0.52
HNF4AP41235 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
HNF4AP41235 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.31■□□□□ 0.52
HNF4AP41235 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.31■□□□□ 0.52
HNF4AP41235 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.3■□□□□ 0.52
HNF4AP41235 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HNF4AP41235 RCC2P6-201ENST00000526625 1557 ntBASIC18.3■□□□□ 0.52
HNF4AP41235 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
HNF4AP41235 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.3■□□□□ 0.52
HNF4AP41235 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.3■□□□□ 0.52
HNF4AP41235 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.3■□□□□ 0.52
HNF4AP41235 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.3■□□□□ 0.52
HNF4AP41235 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HNF4AP41235 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms