Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
MSX2P35548 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.03■□□□□ 0.48
MSX2P35548 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
MSX2P35548 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 MIR638-201ENST00000385237 100 ntBASIC18.03■□□□□ 0.48
MSX2P35548 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.03■□□□□ 0.48
MSX2P35548 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.03■□□□□ 0.48
MSX2P35548 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.03■□□□□ 0.48
MSX2P35548 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.03■□□□□ 0.48
MSX2P35548 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSX2P35548 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
MSX2P35548 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.02■□□□□ 0.48
MSX2P35548 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.02■□□□□ 0.48
MSX2P35548 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.48
MSX2P35548 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
MSX2P35548 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSX2P35548 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
MSX2P35548 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.02■□□□□ 0.48
MSX2P35548 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
MSX2P35548 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.02■□□□□ 0.48
MSX2P35548 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.02■□□□□ 0.48
MSX2P35548 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSX2P35548 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.02■□□□□ 0.48
MSX2P35548 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.02■□□□□ 0.48
MSX2P35548 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.02■□□□□ 0.48
MSX2P35548 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSX2P35548 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.02■□□□□ 0.47
MSX2P35548 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
MSX2P35548 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
MSX2P35548 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
MSX2P35548 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
MSX2P35548 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
MSX2P35548 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
MSX2P35548 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.02■□□□□ 0.47
MSX2P35548 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
MSX2P35548 AC134043.2-201ENST00000624206 2238 ntBASIC18.02■□□□□ 0.47
MSX2P35548 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.02■□□□□ 0.47
MSX2P35548 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.02■□□□□ 0.47
MSX2P35548 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
MSX2P35548 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 KRT8P8-201ENST00000434750 1448 ntBASIC18.01■□□□□ 0.47
MSX2P35548 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.01■□□□□ 0.47
MSX2P35548 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
MSX2P35548 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.01■□□□□ 0.47
MSX2P35548 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.01■□□□□ 0.47
MSX2P35548 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.01■□□□□ 0.47
MSX2P35548 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
MSX2P35548 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.01■□□□□ 0.47
MSX2P35548 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
MSX2P35548 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
MSX2P35548 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
MSX2P35548 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 LINC00896-202ENST00000609602 2128 ntBASIC18.01■□□□□ 0.47
MSX2P35548 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.01■□□□□ 0.47
MSX2P35548 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSX2P35548 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18■□□□□ 0.47
MSX2P35548 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 AL499627.1-201ENST00000569373 2188 ntBASIC18■□□□□ 0.47
MSX2P35548 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18■□□□□ 0.47
MSX2P35548 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
MSX2P35548 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18■□□□□ 0.47
MSX2P35548 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18■□□□□ 0.47
MSX2P35548 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18■□□□□ 0.47
MSX2P35548 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18■□□□□ 0.47
MSX2P35548 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18■□□□□ 0.47
MSX2P35548 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18■□□□□ 0.47
MSX2P35548 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MSX2P35548 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18■□□□□ 0.47
MSX2P35548 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MSX2P35548 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
MSX2P35548 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms