Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.5■□□□□ 0.55
SHMT2P34897 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHMT2P34897 AC007613.1-201ENST00000572811 2597 ntBASIC18.5■□□□□ 0.55
SHMT2P34897 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHMT2P34897 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHMT2P34897 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHMT2P34897 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHMT2P34897 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.5■□□□□ 0.55
SHMT2P34897 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.5■□□□□ 0.55
SHMT2P34897 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHMT2P34897 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHMT2P34897 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SHMT2P34897 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHMT2P34897 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHMT2P34897 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.5■□□□□ 0.55
SHMT2P34897 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHMT2P34897 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
SHMT2P34897 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SHMT2P34897 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.49■□□□□ 0.55
SHMT2P34897 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.49■□□□□ 0.55
SHMT2P34897 KRT8P9-201ENST00000558927 1449 ntBASIC18.49■□□□□ 0.55
SHMT2P34897 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
SHMT2P34897 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.49■□□□□ 0.55
SHMT2P34897 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.49■□□□□ 0.55
SHMT2P34897 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SHMT2P34897 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.49■□□□□ 0.55
SHMT2P34897 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
SHMT2P34897 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 AC133561.5-201ENST00000635547 218 ntBASIC18.49■□□□□ 0.55
SHMT2P34897 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.49■□□□□ 0.55
SHMT2P34897 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.49■□□□□ 0.55
SHMT2P34897 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SHMT2P34897 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.49■□□□□ 0.55
SHMT2P34897 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SHMT2P34897 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHMT2P34897 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHMT2P34897 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHMT2P34897 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHMT2P34897 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.48■□□□□ 0.55
SHMT2P34897 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHMT2P34897 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHMT2P34897 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHMT2P34897 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.48■□□□□ 0.55
SHMT2P34897 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
SHMT2P34897 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHMT2P34897 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHMT2P34897 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.48■□□□□ 0.55
SHMT2P34897 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
SHMT2P34897 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SHMT2P34897 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SHMT2P34897 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHMT2P34897 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SHMT2P34897 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHMT2P34897 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHMT2P34897 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.47■□□□□ 0.55
SHMT2P34897 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 CYP2D8P-201ENST00000433633 1490 ntBASIC18.47■□□□□ 0.55
SHMT2P34897 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SHMT2P34897 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.47■□□□□ 0.55
SHMT2P34897 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 SLC25A1P2-201ENST00000430693 912 ntBASIC18.47■□□□□ 0.55
SHMT2P34897 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.47■□□□□ 0.55
SHMT2P34897 CA15P1-201ENST00000481698 905 ntBASIC18.47■□□□□ 0.55
SHMT2P34897 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.47■□□□□ 0.55
SHMT2P34897 EGLN1P1-201ENST00000531623 762 ntBASIC18.47■□□□□ 0.55
SHMT2P34897 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SHMT2P34897 LINC01023-201ENST00000606054 436 ntBASIC18.47■□□□□ 0.55
SHMT2P34897 AC010947.1-201ENST00000623454 693 ntBASIC18.47■□□□□ 0.55
SHMT2P34897 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHMT2P34897 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SHMT2P34897 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.47■□□□□ 0.55
SHMT2P34897 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.47■□□□□ 0.55
SHMT2P34897 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SHMT2P34897 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.47■□□□□ 0.55
SHMT2P34897 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.47■□□□□ 0.55
SHMT2P34897 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHMT2P34897 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
SHMT2P34897 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SHMT2P34897 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.46■□□□□ 0.55
SHMT2P34897 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms