Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
VCANP13611 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.55■□□□□ 0.72
VCANP13611 GK-202ENST00000378941 458 ntTSL 3 BASIC19.55■□□□□ 0.72
VCANP13611 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.55■□□□□ 0.72
VCANP13611 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC19.55■□□□□ 0.72
VCANP13611 AC009533.2-201ENST00000543664 586 ntBASIC19.55■□□□□ 0.72
VCANP13611 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.55■□□□□ 0.72
VCANP13611 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.55■□□□□ 0.72
VCANP13611 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCANP13611 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.54■□□□□ 0.72
VCANP13611 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
VCANP13611 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.54■□□□□ 0.72
VCANP13611 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VCANP13611 AC090616.6-201ENST00000582640 721 ntBASIC19.54■□□□□ 0.72
VCANP13611 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.54■□□□□ 0.72
VCANP13611 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.54■□□□□ 0.72
VCANP13611 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
VCANP13611 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.54■□□□□ 0.72
VCANP13611 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
VCANP13611 AC245100.3-201ENST00000441281 285 ntBASIC19.54■□□□□ 0.72
VCANP13611 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.54■□□□□ 0.72
VCANP13611 AC092667.1-201ENST00000434301 2586 ntBASIC19.54■□□□□ 0.72
VCANP13611 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
VCANP13611 FP700111.2-201ENST00000619190 1892 ntBASIC19.54■□□□□ 0.72
VCANP13611 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCANP13611 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCANP13611 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
VCANP13611 AL137060.1-201ENST00000618151 2648 ntBASIC19.53■□□□□ 0.72
VCANP13611 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.53■□□□□ 0.72
VCANP13611 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCANP13611 DUX4L17-201ENST00000557360 1267 ntBASIC19.53■□□□□ 0.72
VCANP13611 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.53■□□□□ 0.72
VCANP13611 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.53■□□□□ 0.72
VCANP13611 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VCANP13611 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VCANP13611 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VCANP13611 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
VCANP13611 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
VCANP13611 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.53■□□□□ 0.72
VCANP13611 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC19.53■□□□□ 0.72
VCANP13611 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.52■□□□□ 0.72
VCANP13611 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCANP13611 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCANP13611 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCANP13611 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.52■□□□□ 0.72
VCANP13611 AL592071.1-201ENST00000611956 408 ntBASIC19.52■□□□□ 0.72
VCANP13611 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
VCANP13611 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VCANP13611 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
VCANP13611 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.52■□□□□ 0.72
VCANP13611 AC002347.1-201ENST00000569543 541 ntBASIC19.52■□□□□ 0.72
VCANP13611 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
VCANP13611 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCANP13611 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VCANP13611 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.52■□□□□ 0.71
VCANP13611 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.52■□□□□ 0.71
VCANP13611 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.71
VCANP13611 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.52■□□□□ 0.71
VCANP13611 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.52■□□□□ 0.71
VCANP13611 AP001269.4-201ENST00000609611 512 ntBASIC19.52■□□□□ 0.71
VCANP13611 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
VCANP13611 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VCANP13611 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VCANP13611 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.51■□□□□ 0.71
VCANP13611 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.51■□□□□ 0.71
VCANP13611 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCANP13611 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCANP13611 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.51■□□□□ 0.71
VCANP13611 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCANP13611 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.51■□□□□ 0.71
VCANP13611 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
VCANP13611 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCANP13611 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.51■□□□□ 0.71
VCANP13611 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.51■□□□□ 0.71
VCANP13611 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.51■□□□□ 0.71
VCANP13611 MIR4469-201ENST00000583919 79 ntBASIC19.51■□□□□ 0.71
VCANP13611 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.51■□□□□ 0.71
VCANP13611 AL355877.3-201ENST00000622820 899 ntBASIC19.51■□□□□ 0.71
VCANP13611 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCANP13611 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.51■□□□□ 0.71
VCANP13611 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCANP13611 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCANP13611 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCANP13611 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.5■□□□□ 0.71
VCANP13611 MEIS3P1-201ENST00000495167 958 ntBASIC19.5■□□□□ 0.71
VCANP13611 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms