Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
HMGB1P09429 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HMGB1P09429 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
HMGB1P09429 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.3■■□□□ 1.16
HMGB1P09429 MFAP1P1-201ENST00000442257 1255 ntBASIC22.3■■□□□ 1.16
HMGB1P09429 AC097488.1-201ENST00000507834 756 ntBASIC22.3■■□□□ 1.16
HMGB1P09429 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HMGB1P09429 SLC25A1P4-201ENST00000567977 778 ntBASIC22.3■■□□□ 1.16
HMGB1P09429 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC22.3■■□□□ 1.16
HMGB1P09429 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC22.3■■□□□ 1.16
HMGB1P09429 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC22.3■■□□□ 1.16
HMGB1P09429 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HMGB1P09429 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC22.3■■□□□ 1.16
HMGB1P09429 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC22.3■■□□□ 1.16
HMGB1P09429 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGB1P09429 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC22.3■■□□□ 1.16
HMGB1P09429 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGB1P09429 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC22.3■■□□□ 1.16
HMGB1P09429 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGB1P09429 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGB1P09429 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC22.3■■□□□ 1.16
HMGB1P09429 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC22.29■■□□□ 1.16
HMGB1P09429 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HMGB1P09429 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
HMGB1P09429 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC22.29■■□□□ 1.16
HMGB1P09429 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC22.29■■□□□ 1.16
HMGB1P09429 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC22.29■■□□□ 1.16
HMGB1P09429 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HMGB1P09429 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC22.29■■□□□ 1.16
HMGB1P09429 CA15P1-201ENST00000481698 905 ntBASIC22.29■■□□□ 1.16
HMGB1P09429 AP003071.4-201ENST00000562276 1284 ntBASIC22.29■■□□□ 1.16
HMGB1P09429 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HMGB1P09429 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
HMGB1P09429 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HMGB1P09429 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HMGB1P09429 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC22.29■■□□□ 1.16
HMGB1P09429 ANO7L1-203ENST00000602586 1720 ntBASIC22.28■■□□□ 1.16
HMGB1P09429 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC22.28■■□□□ 1.16
HMGB1P09429 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGB1P09429 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC22.28■■□□□ 1.16
HMGB1P09429 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
HMGB1P09429 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGB1P09429 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGB1P09429 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGB1P09429 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGB1P09429 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 MIR4785-201ENST00000585005 73 ntBASIC22.28■■□□□ 1.16
HMGB1P09429 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
HMGB1P09429 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
HMGB1P09429 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGB1P09429 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HMGB1P09429 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGB1P09429 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC22.27■■□□□ 1.16
HMGB1P09429 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGB1P09429 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HMGB1P09429 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
HMGB1P09429 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGB1P09429 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC22.27■■□□□ 1.16
HMGB1P09429 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HMGB1P09429 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HMGB1P09429 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGB1P09429 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HMGB1P09429 AP005242.2-201ENST00000580065 1175 ntBASIC22.27■■□□□ 1.16
HMGB1P09429 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC22.27■■□□□ 1.16
HMGB1P09429 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.15
HMGB1P09429 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
HMGB1P09429 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HMGB1P09429 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC22.26■■□□□ 1.15
HMGB1P09429 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC22.26■■□□□ 1.15
HMGB1P09429 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGB1P09429 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC22.26■■□□□ 1.15
HMGB1P09429 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC22.26■■□□□ 1.15
HMGB1P09429 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC22.26■■□□□ 1.15
HMGB1P09429 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGB1P09429 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
HMGB1P09429 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGB1P09429 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC22.26■■□□□ 1.15
HMGB1P09429 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
HMGB1P09429 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC22.26■■□□□ 1.15
HMGB1P09429 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC22.26■■□□□ 1.15
HMGB1P09429 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HMGB1P09429 DHDH-203ENST00000522614 776 ntTSL 5 BASIC22.26■■□□□ 1.15
HMGB1P09429 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC22.26■■□□□ 1.15
HMGB1P09429 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC22.26■■□□□ 1.15
HMGB1P09429 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC22.26■■□□□ 1.15
HMGB1P09429 CYGB-204ENST00000589342 815 ntTSL 3 BASIC22.26■■□□□ 1.15
HMGB1P09429 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC22.26■■□□□ 1.15
HMGB1P09429 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC22.26■■□□□ 1.15
HMGB1P09429 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HMGB1P09429 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms