Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 UBE2DNL-204ENST00000602536 740 ntBASIC18.99■□□□□ 0.63
VIMP08670 AC083906.6-201ENST00000641366 219 ntBASIC18.99■□□□□ 0.63
VIMP08670 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
VIMP08670 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 AC009053.2-201ENST00000563701 2365 ntBASIC18.99■□□□□ 0.63
VIMP08670 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
VIMP08670 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 AC004854.2-201ENST00000608450 1441 ntBASIC18.99■□□□□ 0.63
VIMP08670 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VIMP08670 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.98■□□□□ 0.63
VIMP08670 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.98■□□□□ 0.63
VIMP08670 FEM1AP3-201ENST00000403722 1741 ntBASIC18.98■□□□□ 0.63
VIMP08670 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VIMP08670 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VIMP08670 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VIMP08670 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.98■□□□□ 0.63
VIMP08670 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
VIMP08670 SUDS3P1-201ENST00000505831 966 ntBASIC18.98■□□□□ 0.63
VIMP08670 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.98■□□□□ 0.63
VIMP08670 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
VIMP08670 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VIMP08670 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VIMP08670 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.97■□□□□ 0.63
VIMP08670 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 AC134043.2-201ENST00000624206 2238 ntBASIC18.97■□□□□ 0.63
VIMP08670 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.97■□□□□ 0.63
VIMP08670 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.97■□□□□ 0.63
VIMP08670 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
VIMP08670 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
VIMP08670 TERF1P5-201ENST00000477545 1207 ntBASIC18.97■□□□□ 0.63
VIMP08670 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.97■□□□□ 0.63
VIMP08670 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.97■□□□□ 0.63
VIMP08670 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VIMP08670 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.96■□□□□ 0.63
VIMP08670 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
VIMP08670 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
VIMP08670 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.96■□□□□ 0.63
VIMP08670 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.96■□□□□ 0.63
VIMP08670 KRT18P68-201ENST00000392293 1000 ntBASIC18.96■□□□□ 0.63
VIMP08670 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.96■□□□□ 0.63
VIMP08670 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
VIMP08670 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.96■□□□□ 0.63
VIMP08670 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VIMP08670 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
VIMP08670 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.96■□□□□ 0.63
VIMP08670 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
VIMP08670 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
VIMP08670 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VIMP08670 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VIMP08670 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
VIMP08670 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.95■□□□□ 0.62
VIMP08670 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VIMP08670 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
VIMP08670 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms