Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 SPEG-225ENST00000617028 815 ntTSL 5 BASIC29.48■■■□□ 2.31
PCF11O94913 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
PCF11O94913 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC29.48■■■□□ 2.31
PCF11O94913 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
PCF11O94913 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
PCF11O94913 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC29.48■■■□□ 2.31
PCF11O94913 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
PCF11O94913 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC29.48■■■□□ 2.31
PCF11O94913 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC29.48■■■□□ 2.31
PCF11O94913 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC29.48■■■□□ 2.31
PCF11O94913 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC29.47■■■□□ 2.31
PCF11O94913 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 AP002383.4-201ENST00000442518 975 ntBASIC29.47■■■□□ 2.31
PCF11O94913 KRT17P6-201ENST00000453795 1220 ntBASIC29.47■■■□□ 2.31
PCF11O94913 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 TEN1-204ENST00000588202 862 ntTSL 3 BASIC29.47■■■□□ 2.31
PCF11O94913 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC29.47■■■□□ 2.31
PCF11O94913 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC29.47■■■□□ 2.31
PCF11O94913 AL391807.1-203ENST00000604392 2365 ntBASIC29.47■■■□□ 2.31
PCF11O94913 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC29.47■■■□□ 2.31
PCF11O94913 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC29.47■■■□□ 2.31
PCF11O94913 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC29.47■■■□□ 2.31
PCF11O94913 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC29.47■■■□□ 2.31
PCF11O94913 AL022342.1-201ENST00000400363 863 ntBASIC29.47■■■□□ 2.31
PCF11O94913 KRT18P23-201ENST00000435622 1283 ntBASIC29.47■■■□□ 2.31
PCF11O94913 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC29.47■■■□□ 2.31
PCF11O94913 NAT14-202ENST00000587400 416 ntTSL 5 BASIC29.47■■■□□ 2.31
PCF11O94913 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCF11O94913 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC29.47■■■□□ 2.31
PCF11O94913 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
PCF11O94913 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC29.46■■■□□ 2.31
PCF11O94913 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC29.46■■■□□ 2.31
PCF11O94913 KRT8P32-201ENST00000512863 1461 ntBASIC29.46■■■□□ 2.31
PCF11O94913 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC29.46■■■□□ 2.31
PCF11O94913 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC29.46■■■□□ 2.31
PCF11O94913 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC29.46■■■□□ 2.31
PCF11O94913 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC29.46■■■□□ 2.31
PCF11O94913 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC29.46■■■□□ 2.31
PCF11O94913 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC29.46■■■□□ 2.31
PCF11O94913 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
PCF11O94913 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
PCF11O94913 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
PCF11O94913 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC29.46■■■□□ 2.31
PCF11O94913 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC29.46■■■□□ 2.31
PCF11O94913 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
PCF11O94913 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC29.46■■■□□ 2.31
PCF11O94913 MTMR9LP-203ENST00000426597 1545 ntBASIC29.46■■■□□ 2.31
PCF11O94913 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
PCF11O94913 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
PCF11O94913 FP475955.4-201ENST00000623131 1990 ntBASIC29.45■■■□□ 2.31
PCF11O94913 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
PCF11O94913 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
PCF11O94913 RNF126P1-202ENST00000569893 925 ntBASIC29.45■■■□□ 2.31
PCF11O94913 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC29.45■■■□□ 2.31
PCF11O94913 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC29.45■■■□□ 2.3
PCF11O94913 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
PCF11O94913 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC29.45■■■□□ 2.3
PCF11O94913 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
PCF11O94913 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC29.44■■■□□ 2.3
PCF11O94913 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
PCF11O94913 AC104390.1-201ENST00000555663 520 ntBASIC29.44■■■□□ 2.3
PCF11O94913 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC29.44■■■□□ 2.3
PCF11O94913 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC29.44■■■□□ 2.3
PCF11O94913 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC29.44■■■□□ 2.3
PCF11O94913 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC29.44■■■□□ 2.3
PCF11O94913 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC29.44■■■□□ 2.3
PCF11O94913 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC29.44■■■□□ 2.3
PCF11O94913 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
PCF11O94913 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC29.43■■■□□ 2.3
PCF11O94913 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
PCF11O94913 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
PCF11O94913 AC068587.9-201ENST00000641814 219 ntBASIC29.43■■■□□ 2.3
PCF11O94913 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
PCF11O94913 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC29.43■■■□□ 2.3
PCF11O94913 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC29.43■■■□□ 2.3
PCF11O94913 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
PCF11O94913 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC29.43■■■□□ 2.3
PCF11O94913 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC29.43■■■□□ 2.3
PCF11O94913 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC29.43■■■□□ 2.3
PCF11O94913 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
PCF11O94913 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
PCF11O94913 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC29.42■■■□□ 2.3
PCF11O94913 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC29.42■■■□□ 2.3
PCF11O94913 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
PCF11O94913 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms