Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
CHMP2AO43633 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.24■□□□□ 0.99
CHMP2AO43633 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
CHMP2AO43633 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.24■□□□□ 0.99
CHMP2AO43633 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.24■□□□□ 0.99
CHMP2AO43633 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.24■□□□□ 0.99
CHMP2AO43633 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.24■□□□□ 0.99
CHMP2AO43633 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.24■□□□□ 0.99
CHMP2AO43633 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.24■□□□□ 0.99
CHMP2AO43633 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.24■□□□□ 0.99
CHMP2AO43633 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.24■□□□□ 0.99
CHMP2AO43633 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC21.24■□□□□ 0.99
CHMP2AO43633 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CHMP2AO43633 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP2AO43633 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CHMP2AO43633 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP2AO43633 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP2AO43633 KRT8P3-201ENST00000519669 1449 ntBASIC21.23■□□□□ 0.99
CHMP2AO43633 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP2AO43633 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CHMP2AO43633 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CHMP2AO43633 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CHMP2AO43633 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.23■□□□□ 0.99
CHMP2AO43633 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC21.23■□□□□ 0.99
CHMP2AO43633 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CHMP2AO43633 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP2AO43633 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP2AO43633 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP2AO43633 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.23■□□□□ 0.99
CHMP2AO43633 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP2AO43633 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP2AO43633 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP2AO43633 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.23■□□□□ 0.99
CHMP2AO43633 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.23■□□□□ 0.99
CHMP2AO43633 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP2AO43633 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CHMP2AO43633 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CHMP2AO43633 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
CHMP2AO43633 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP2AO43633 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.22■□□□□ 0.99
CHMP2AO43633 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CHMP2AO43633 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.22■□□□□ 0.99
CHMP2AO43633 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.22■□□□□ 0.99
CHMP2AO43633 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP2AO43633 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP2AO43633 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CHMP2AO43633 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.22■□□□□ 0.99
CHMP2AO43633 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CHMP2AO43633 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP2AO43633 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
CHMP2AO43633 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.22■□□□□ 0.99
CHMP2AO43633 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.22■□□□□ 0.99
CHMP2AO43633 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP2AO43633 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.22■□□□□ 0.99
CHMP2AO43633 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.22■□□□□ 0.99
CHMP2AO43633 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP2AO43633 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.21■□□□□ 0.99
CHMP2AO43633 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.21■□□□□ 0.99
CHMP2AO43633 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
CHMP2AO43633 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
CHMP2AO43633 AL023284.2-201ENST00000405850 579 ntBASIC21.21■□□□□ 0.99
CHMP2AO43633 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.21■□□□□ 0.99
CHMP2AO43633 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.21■□□□□ 0.99
CHMP2AO43633 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.21■□□□□ 0.99
CHMP2AO43633 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.21■□□□□ 0.99
CHMP2AO43633 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CHMP2AO43633 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP2AO43633 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
CHMP2AO43633 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.2■□□□□ 0.98
CHMP2AO43633 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
CHMP2AO43633 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms