Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
MSH4O15457 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH4O15457 AL109659.2-201ENST00000606809 1674 ntBASIC21.22■□□□□ 0.99
MSH4O15457 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MSH4O15457 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH4O15457 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.22■□□□□ 0.99
MSH4O15457 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.22■□□□□ 0.99
MSH4O15457 BX664615.1-201ENST00000443558 458 ntBASIC21.22■□□□□ 0.99
MSH4O15457 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
MSH4O15457 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
MSH4O15457 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH4O15457 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
MSH4O15457 AC068587.9-201ENST00000641814 219 ntBASIC21.22■□□□□ 0.99
MSH4O15457 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH4O15457 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH4O15457 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH4O15457 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MSH4O15457 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH4O15457 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH4O15457 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH4O15457 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.21■□□□□ 0.99
MSH4O15457 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.21■□□□□ 0.99
MSH4O15457 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH4O15457 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
MSH4O15457 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH4O15457 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.21■□□□□ 0.99
MSH4O15457 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH4O15457 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.21■□□□□ 0.99
MSH4O15457 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH4O15457 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.21■□□□□ 0.99
MSH4O15457 AC009947.2-201ENST00000444014 672 ntBASIC21.21■□□□□ 0.99
MSH4O15457 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.21■□□□□ 0.99
MSH4O15457 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.21■□□□□ 0.99
MSH4O15457 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.21■□□□□ 0.99
MSH4O15457 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
MSH4O15457 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
MSH4O15457 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
MSH4O15457 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
MSH4O15457 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH4O15457 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH4O15457 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
MSH4O15457 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.99
MSH4O15457 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH4O15457 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH4O15457 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH4O15457 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH4O15457 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
MSH4O15457 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH4O15457 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
MSH4O15457 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH4O15457 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH4O15457 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH4O15457 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH4O15457 AC117947.1-201ENST00000427448 529 ntBASIC21.2■□□□□ 0.98
MSH4O15457 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH4O15457 MIR3180-5-201ENST00000583743 153 ntBASIC21.2■□□□□ 0.98
MSH4O15457 AC139887.4-201ENST00000607877 719 ntBASIC21.2■□□□□ 0.98
MSH4O15457 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH4O15457 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH4O15457 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
MSH4O15457 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH4O15457 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH4O15457 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH4O15457 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
MSH4O15457 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH4O15457 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.19■□□□□ 0.98
MSH4O15457 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.19■□□□□ 0.98
MSH4O15457 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH4O15457 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC21.19■□□□□ 0.98
MSH4O15457 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.19■□□□□ 0.98
MSH4O15457 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.19■□□□□ 0.98
MSH4O15457 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.19■□□□□ 0.98
MSH4O15457 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
MSH4O15457 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.19■□□□□ 0.98
MSH4O15457 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
MSH4O15457 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH4O15457 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH4O15457 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
MSH4O15457 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH4O15457 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms