Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CBX4O00257 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CBX4O00257 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CBX4O00257 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.31■□□□□ 0.68
CBX4O00257 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CBX4O00257 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CBX4O00257 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CBX4O00257 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CBX4O00257 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CBX4O00257 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CBX4O00257 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CBX4O00257 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.3■□□□□ 0.68
CBX4O00257 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.3■□□□□ 0.68
CBX4O00257 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.3■□□□□ 0.68
CBX4O00257 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.3■□□□□ 0.68
CBX4O00257 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.3■□□□□ 0.68
CBX4O00257 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.3■□□□□ 0.68
CBX4O00257 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.3■□□□□ 0.68
CBX4O00257 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.3■□□□□ 0.68
CBX4O00257 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.3■□□□□ 0.68
CBX4O00257 AC008622.2-201ENST00000617006 1229 ntBASIC19.3■□□□□ 0.68
CBX4O00257 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.3■□□□□ 0.68
CBX4O00257 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CBX4O00257 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.3■□□□□ 0.68
CBX4O00257 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.3■□□□□ 0.68
CBX4O00257 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.3■□□□□ 0.68
CBX4O00257 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CBX4O00257 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.3■□□□□ 0.68
CBX4O00257 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.3■□□□□ 0.68
CBX4O00257 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CBX4O00257 AL161938.1-201ENST00000569833 2180 ntBASIC19.29■□□□□ 0.68
CBX4O00257 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CBX4O00257 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.29■□□□□ 0.68
CBX4O00257 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 KRT8P3-201ENST00000519669 1449 ntBASIC19.29■□□□□ 0.68
CBX4O00257 AC073508.3-201ENST00000619697 1419 ntBASIC19.29■□□□□ 0.68
CBX4O00257 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.29■□□□□ 0.68
CBX4O00257 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.29■□□□□ 0.68
CBX4O00257 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.29■□□□□ 0.68
CBX4O00257 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.29■□□□□ 0.68
CBX4O00257 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CBX4O00257 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.29■□□□□ 0.68
CBX4O00257 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.28■□□□□ 0.68
CBX4O00257 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CBX4O00257 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CBX4O00257 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.28■□□□□ 0.68
CBX4O00257 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CBX4O00257 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.28■□□□□ 0.68
CBX4O00257 AC104076.2-201ENST00000448912 469 ntBASIC19.28■□□□□ 0.68
CBX4O00257 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.28■□□□□ 0.68
CBX4O00257 NTF6B-201ENST00000591913 560 ntBASIC19.28■□□□□ 0.68
CBX4O00257 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CBX4O00257 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.28■□□□□ 0.68
CBX4O00257 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.28■□□□□ 0.68
CBX4O00257 AL049812.1-201ENST00000432563 2267 ntBASIC19.28■□□□□ 0.68
CBX4O00257 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.28■□□□□ 0.68
CBX4O00257 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.28■□□□□ 0.68
CBX4O00257 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CBX4O00257 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CBX4O00257 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CBX4O00257 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CBX4O00257 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms