Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 PRSS29P-201ENST00000440800 595 ntBASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 AC005225.4-201ENST00000557330 545 ntBASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC85CA6NKD9 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC85CA6NKD9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.93■□□□□ 0.94
CCDC85CA6NKD9 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC85CA6NKD9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC85CA6NKD9 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC85CA6NKD9 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC85CA6NKD9 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC20.93■□□□□ 0.94
CCDC85CA6NKD9 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC85CA6NKD9 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CCDC85CA6NKD9 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
CCDC85CA6NKD9 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC85CA6NKD9 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 COX5A-206ENST00000568783 571 ntTSL 3 BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 AC008735.5-201ENST00000623544 497 ntBASIC20.91■□□□□ 0.94
CCDC85CA6NKD9 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 AL353692.3-201ENST00000407031 1396 ntBASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 CD82-202ENST00000342935 967 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 AC105339.3-201ENST00000560043 636 ntBASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 AC004449.1-201ENST00000564240 433 ntBASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 AC010240.3-201ENST00000607688 395 ntBASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 AC064836.3-201ENST00000607928 673 ntBASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC85CA6NKD9 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC85CA6NKD9 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms