Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 RNU6-476P-201ENST00000384726 107 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 RNA5SP354-201ENST00000391247 136 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 AL035423.1-201ENST00000420331 213 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 HMGN2P18-201ENST00000450680 270 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 EEF1B2P7-201ENST00000451177 676 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 AC090515.1-201ENST00000465295 476 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 RN7SKP18-201ENST00000516005 275 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 RN7SKP43-201ENST00000516173 320 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 RNA5SP76-201ENST00000516277 87 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 MIR2116-201ENST00000517221 80 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.24□□□□□ -1.89
SSU72Q9NP77 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.24□□□□□ -1.89
SSU72Q9NP77 MIR3914-2-201ENST00000637339 95 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SSU72Q9NP77 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SSU72Q9NP77 AC138915.1-201ENST00000565427 1685 ntBASIC3.24□□□□□ -1.89
SSU72Q9NP77 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.23□□□□□ -1.89
SSU72Q9NP77 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
SSU72Q9NP77 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SSU72Q9NP77 RNA5SP295-201ENST00000362655 121 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 MIR181A2-201ENST00000384863 110 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 SNORD17-201ENST00000390930 237 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 RNU6-628P-201ENST00000410675 107 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 AL353705.1-201ENST00000433468 480 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 RPS4XP11-201ENST00000446897 772 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 SNORD77.4-201ENST00000516158 81 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 RNU6-965P-201ENST00000516721 96 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 RNU6-586P-201ENST00000517265 104 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 SCARNA11.3-201ENST00000517276 130 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 RNU2-60P-201ENST00000517290 128 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 IGKV2-26-201ENST00000518305 343 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 AC090142.3-201ENST00000519012 385 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 PRELID2P1-201ENST00000552837 301 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 MIR4474-201ENST00000579189 78 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 MIR3121-201ENST00000579680 77 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 AC013412.1-201ENST00000610687 192 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 UCA1.1-201ENST00000620952 75 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 AC009487.4-201ENST00000624969 3585 ntBASIC3.23□□□□□ -1.89
SSU72Q9NP77 Y_RNA.91-201ENST00000363042 107 ntBASIC3.22□□□□□ -1.89
SSU72Q9NP77 RNU1-22P-201ENST00000363334 158 ntBASIC3.22□□□□□ -1.89
SSU72Q9NP77 RNU6-1240P-201ENST00000365155 104 ntBASIC3.22□□□□□ -1.89
SSU72Q9NP77 SNORA79-201ENST00000408376 140 ntBASIC3.22□□□□□ -1.89
SSU72Q9NP77 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.22□□□□□ -1.89
SSU72Q9NP77 AC092017.2-201ENST00000427600 362 ntBASIC3.22□□□□□ -1.89
SSU72Q9NP77 MTCO1P44-201ENST00000441935 243 ntBASIC3.22□□□□□ -1.89
SSU72Q9NP77 SNORD11-201ENST00000459124 84 ntBASIC3.22□□□□□ -1.89
SSU72Q9NP77 RNU6-1299P-201ENST00000516316 100 ntBASIC3.22□□□□□ -1.89
SSU72Q9NP77 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
SSU72Q9NP77 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.22□□□□□ -1.89
SSU72Q9NP77 AC097639.2-201ENST00000603159 172 ntBASIC3.22□□□□□ -1.89
SSU72Q9NP77 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
SSU72Q9NP77 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
SSU72Q9NP77 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SSU72Q9NP77 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
SSU72Q9NP77 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC3.22□□□□□ -1.89
SSU72Q9NP77 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.22□□□□□ -1.89
SSU72Q9NP77 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.22□□□□□ -1.89
SSU72Q9NP77 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SSU72Q9NP77 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SSU72Q9NP77 RNU6-1298P-201ENST00000362456 101 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 RNU6-508P-201ENST00000363231 103 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 Y_RNA.203-201ENST00000364106 102 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 Y_RNA.796-201ENST00000364268 102 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 SNORA70.2-201ENST00000364506 135 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 Y_RNA.799-201ENST00000364992 102 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 Y_RNA.630-201ENST00000411370 108 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.21□□□□□ -1.9
SSU72Q9NP77 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.21□□□□□ -1.9
SSU72Q9NP77 MICF-203ENST00000432679 129 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 AL158147.1-201ENST00000443970 75 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 RPL27AP5-201ENST00000469428 449 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 RPS27P22-201ENST00000478056 241 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 AC093663.1-201ENST00000497190 394 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 YWHAEP4-201ENST00000505390 198 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 RNU6-772P-201ENST00000516042 105 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 RNU6-589P-201ENST00000516485 107 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 Y_RNA.709-201ENST00000516952 92 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 RNU6-711P-201ENST00000517255 106 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SSU72Q9NP77 CYCSP26-201ENST00000534107 320 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.21□□□□□ -1.9
SSU72Q9NP77 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.21□□□□□ -1.9
SSU72Q9NP77 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.21□□□□□ -1.9
SSU72Q9NP77 uc_338.4-201ENST00000616635 176 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.21□□□□□ -1.9
SSU72Q9NP77 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
SSU72Q9NP77 AC103988.1-201ENST00000566382 2177 ntBASIC3.21□□□□□ -1.9
SSU72Q9NP77 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
SSU72Q9NP77 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SSU72Q9NP77 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.2□□□□□ -1.9
SSU72Q9NP77 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SSU72Q9NP77 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
SSU72Q9NP77 Y_RNA.120-201ENST00000363304 110 ntBASIC3.2□□□□□ -1.9
SSU72Q9NP77 RNU4-13P-201ENST00000364019 141 ntBASIC3.2□□□□□ -1.9
SSU72Q9NP77 Y_RNA.634-201ENST00000364811 113 ntBASIC3.2□□□□□ -1.9
SSU72Q9NP77 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
SSU72Q9NP77 RPS29P7-201ENST00000439662 171 ntBASIC3.2□□□□□ -1.9
SSU72Q9NP77 AC025750.2-201ENST00000442609 450 ntBASIC3.2□□□□□ -1.9
SSU72Q9NP77 AC080013.2-201ENST00000460866 323 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms