Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 CLN6-214ENST00000636314 442 ntTSL 3 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 FXN-203ENST00000396366 922 ntTSL 2 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 AL671277.2-201ENST00000458060 996 ntBASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NOTCH3Q9UM47 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
NOTCH3Q9UM47 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NOTCH3Q9UM47 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
NOTCH3Q9UM47 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NOTCH3Q9UM47 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
NOTCH3Q9UM47 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NOTCH3Q9UM47 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
NOTCH3Q9UM47 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC14.58□□□□□ -0.08
NOTCH3Q9UM47 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms