Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VPS28Q9UK41 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS28Q9UK41 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS28Q9UK41 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS28Q9UK41 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS28Q9UK41 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VPS28Q9UK41 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS28Q9UK41 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VPS28Q9UK41 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS28Q9UK41 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS28Q9UK41 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS28Q9UK41 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS28Q9UK41 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS28Q9UK41 AC113347.1-201ENST00000413321 391 ntBASIC19.46■□□□□ 0.71
VPS28Q9UK41 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.46■□□□□ 0.71
VPS28Q9UK41 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS28Q9UK41 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS28Q9UK41 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS28Q9UK41 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VPS28Q9UK41 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
VPS28Q9UK41 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.46■□□□□ 0.71
VPS28Q9UK41 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
VPS28Q9UK41 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS28Q9UK41 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VPS28Q9UK41 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
VPS28Q9UK41 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
VPS28Q9UK41 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VPS28Q9UK41 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS28Q9UK41 AC092338.2-201ENST00000568827 1415 ntBASIC19.45■□□□□ 0.7
VPS28Q9UK41 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS28Q9UK41 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS28Q9UK41 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.45■□□□□ 0.7
VPS28Q9UK41 AC007663.1-201ENST00000438948 1240 ntBASIC19.45■□□□□ 0.7
VPS28Q9UK41 FAM210CP-201ENST00000445714 574 ntBASIC19.45■□□□□ 0.7
VPS28Q9UK41 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
VPS28Q9UK41 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS28Q9UK41 FAM87A-204ENST00000613235 858 ntBASIC19.45■□□□□ 0.7
VPS28Q9UK41 AL023803.3-201ENST00000615559 522 ntBASIC19.45■□□□□ 0.7
VPS28Q9UK41 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS28Q9UK41 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS28Q9UK41 TEX21P-204ENST00000641479 1693 ntBASIC19.45■□□□□ 0.7
VPS28Q9UK41 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS28Q9UK41 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
VPS28Q9UK41 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS28Q9UK41 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS28Q9UK41 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS28Q9UK41 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS28Q9UK41 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS28Q9UK41 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS28Q9UK41 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
VPS28Q9UK41 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
VPS28Q9UK41 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS28Q9UK41 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS28Q9UK41 AC005521.1-201ENST00000393351 872 ntBASIC19.44■□□□□ 0.7
VPS28Q9UK41 RCN1P1-201ENST00000400413 996 ntBASIC19.44■□□□□ 0.7
VPS28Q9UK41 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS28Q9UK41 AL137013.1-201ENST00000432946 1228 ntBASIC19.44■□□□□ 0.7
VPS28Q9UK41 AL353719.1-201ENST00000566847 864 ntBASIC19.44■□□□□ 0.7
VPS28Q9UK41 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
VPS28Q9UK41 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VPS28Q9UK41 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS28Q9UK41 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS28Q9UK41 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS28Q9UK41 AL032819.2-201ENST00000624543 2162 ntBASIC19.43■□□□□ 0.7
VPS28Q9UK41 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS28Q9UK41 AC004408.2-201ENST00000623613 2777 ntBASIC19.43■□□□□ 0.7
VPS28Q9UK41 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS28Q9UK41 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS28Q9UK41 LIN28AP1-201ENST00000429574 405 ntBASIC19.43■□□□□ 0.7
VPS28Q9UK41 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.43■□□□□ 0.7
VPS28Q9UK41 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS28Q9UK41 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.43■□□□□ 0.7
VPS28Q9UK41 AC010653.2-201ENST00000623505 997 ntBASIC19.43■□□□□ 0.7
VPS28Q9UK41 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS28Q9UK41 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS28Q9UK41 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS28Q9UK41 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS28Q9UK41 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS28Q9UK41 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS28Q9UK41 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS28Q9UK41 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS28Q9UK41 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS28Q9UK41 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS28Q9UK41 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
VPS28Q9UK41 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms