Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL20A1Q9P218 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL20A1Q9P218 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 AL109659.2-201ENST00000606809 1674 ntBASIC21.41■■□□□ 1.02
COL20A1Q9P218 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL20A1Q9P218 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL20A1Q9P218 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL20A1Q9P218 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL20A1Q9P218 SEC1P-202ENST00000473944 940 ntBASIC21.41■■□□□ 1.02
COL20A1Q9P218 AC092597.1-201ENST00000487352 616 ntBASIC21.41■■□□□ 1.02
COL20A1Q9P218 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL20A1Q9P218 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 AP000550.4-202ENST00000639755 178 ntBASIC21.41■■□□□ 1.02
COL20A1Q9P218 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL20A1Q9P218 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL20A1Q9P218 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.41■■□□□ 1.02
COL20A1Q9P218 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL20A1Q9P218 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL20A1Q9P218 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.4■■□□□ 1.02
COL20A1Q9P218 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL20A1Q9P218 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL20A1Q9P218 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.4■■□□□ 1.02
COL20A1Q9P218 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL20A1Q9P218 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL20A1Q9P218 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.4■■□□□ 1.02
COL20A1Q9P218 KRT8P32-201ENST00000512863 1461 ntBASIC21.4■■□□□ 1.02
COL20A1Q9P218 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
COL20A1Q9P218 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL20A1Q9P218 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
COL20A1Q9P218 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL20A1Q9P218 RASA4DP-201ENST00000460726 1199 ntBASIC21.4■■□□□ 1.02
COL20A1Q9P218 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL20A1Q9P218 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL20A1Q9P218 CBFB-203ENST00000561924 584 ntTSL 5 BASIC21.4■■□□□ 1.02
COL20A1Q9P218 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
COL20A1Q9P218 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.4■■□□□ 1.02
COL20A1Q9P218 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL20A1Q9P218 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL20A1Q9P218 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.4■■□□□ 1.02
COL20A1Q9P218 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.02
COL20A1Q9P218 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL20A1Q9P218 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.39■■□□□ 1.02
COL20A1Q9P218 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
COL20A1Q9P218 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL20A1Q9P218 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL20A1Q9P218 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL20A1Q9P218 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.01
COL20A1Q9P218 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL20A1Q9P218 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL20A1Q9P218 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL20A1Q9P218 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL20A1Q9P218 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL20A1Q9P218 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.39■■□□□ 1.01
COL20A1Q9P218 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.39■■□□□ 1.01
COL20A1Q9P218 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.39■■□□□ 1.01
COL20A1Q9P218 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC21.39■■□□□ 1.01
COL20A1Q9P218 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.39■■□□□ 1.01
COL20A1Q9P218 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.39■■□□□ 1.01
COL20A1Q9P218 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.39■■□□□ 1.01
COL20A1Q9P218 AC116407.4-201ENST00000623319 1061 ntBASIC21.39■■□□□ 1.01
COL20A1Q9P218 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.39■■□□□ 1.01
COL20A1Q9P218 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.39■■□□□ 1.01
COL20A1Q9P218 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL20A1Q9P218 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL20A1Q9P218 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL20A1Q9P218 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.39■■□□□ 1.01
COL20A1Q9P218 LINC01311-201ENST00000565162 1445 ntBASIC21.38■■□□□ 1.01
COL20A1Q9P218 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
COL20A1Q9P218 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.38■■□□□ 1.01
COL20A1Q9P218 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.38■■□□□ 1.01
COL20A1Q9P218 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.38■■□□□ 1.01
COL20A1Q9P218 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.38■■□□□ 1.01
COL20A1Q9P218 ZNF444P1-201ENST00000559497 298 ntBASIC21.38■■□□□ 1.01
COL20A1Q9P218 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.38■■□□□ 1.01
COL20A1Q9P218 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.38■■□□□ 1.01
COL20A1Q9P218 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.38■■□□□ 1.01
COL20A1Q9P218 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.38■■□□□ 1.01
COL20A1Q9P218 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL20A1Q9P218 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms