Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM56Q9BRZ2 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 AC026471.1-201ENST00000564629 3026 ntBASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 AL512353.2-201ENST00000448759 1962 ntBASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 WIZP1-201ENST00000531444 2299 ntBASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 MIR4651-201ENST00000582622 73 ntBASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM56Q9BRZ2 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 AC026366.1-201ENST00000488803 879 ntBASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 C1QL1P1-201ENST00000568105 661 ntBASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 AL023875.1-201ENST00000640777 796 ntBASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM56Q9BRZ2 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 FEM1AP3-201ENST00000403722 1741 ntBASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM56Q9BRZ2 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
TRIM56Q9BRZ2 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM56Q9BRZ2 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM56Q9BRZ2 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM56Q9BRZ2 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM56Q9BRZ2 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
TRIM56Q9BRZ2 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM56Q9BRZ2 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM56Q9BRZ2 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
TRIM56Q9BRZ2 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms