Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA1Q96BD8 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.4■□□□□ 0.7
SKA1Q96BD8 PHGDH-210ENST00000641115 1638 ntBASIC19.4■□□□□ 0.7
SKA1Q96BD8 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.4■□□□□ 0.7
SKA1Q96BD8 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.39■□□□□ 0.7
SKA1Q96BD8 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.39■□□□□ 0.7
SKA1Q96BD8 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.39■□□□□ 0.7
SKA1Q96BD8 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SKA1Q96BD8 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 KRT18P57-201ENST00000443599 1254 ntBASIC19.39■□□□□ 0.69
SKA1Q96BD8 B3GAT3P1-201ENST00000471720 806 ntBASIC19.39■□□□□ 0.69
SKA1Q96BD8 AC097488.1-201ENST00000507834 756 ntBASIC19.39■□□□□ 0.69
SKA1Q96BD8 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SKA1Q96BD8 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.39■□□□□ 0.69
SKA1Q96BD8 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SKA1Q96BD8 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SKA1Q96BD8 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
SKA1Q96BD8 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SKA1Q96BD8 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.38■□□□□ 0.69
SKA1Q96BD8 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SKA1Q96BD8 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.38■□□□□ 0.69
SKA1Q96BD8 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.38■□□□□ 0.69
SKA1Q96BD8 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SKA1Q96BD8 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.38■□□□□ 0.69
SKA1Q96BD8 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SKA1Q96BD8 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.38■□□□□ 0.69
SKA1Q96BD8 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.38■□□□□ 0.69
SKA1Q96BD8 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.38■□□□□ 0.69
SKA1Q96BD8 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SKA1Q96BD8 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SKA1Q96BD8 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SKA1Q96BD8 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.37■□□□□ 0.69
SKA1Q96BD8 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.37■□□□□ 0.69
SKA1Q96BD8 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SKA1Q96BD8 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.37■□□□□ 0.69
SKA1Q96BD8 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SKA1Q96BD8 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.37■□□□□ 0.69
SKA1Q96BD8 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SKA1Q96BD8 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SKA1Q96BD8 CRYGFP-201ENST00000418459 633 ntBASIC19.37■□□□□ 0.69
SKA1Q96BD8 AC004980.1-204ENST00000429707 299 ntBASIC19.37■□□□□ 0.69
SKA1Q96BD8 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.37■□□□□ 0.69
SKA1Q96BD8 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SKA1Q96BD8 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SKA1Q96BD8 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SKA1Q96BD8 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SKA1Q96BD8 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.37■□□□□ 0.69
SKA1Q96BD8 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SKA1Q96BD8 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.37■□□□□ 0.69
SKA1Q96BD8 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SKA1Q96BD8 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SKA1Q96BD8 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.37■□□□□ 0.69
SKA1Q96BD8 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 TSPY14P-201ENST00000303979 915 ntBASIC19.36■□□□□ 0.69
SKA1Q96BD8 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms