Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 HLA-F-220ENST00000434407 884 ntBASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 UNC93B7-201ENST00000509439 705 ntBASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 PRELID1P1-202ENST00000567272 903 ntBASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 AP002414.4-201ENST00000589764 1148 ntBASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 AL121672.3-201ENST00000608644 468 ntBASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 RCC2P3-201ENST00000418112 1537 ntBASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 AL391807.1-203ENST00000604392 2365 ntBASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 GRAMD4P1-201ENST00000435181 1110 ntBASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 RNF126P1-202ENST00000569893 925 ntBASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 MIR3917-201ENST00000580971 93 ntBASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 AL136038.4-201ENST00000603606 1261 ntBASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
USHBP1Q8N6Y0 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 SDHD-206ENST00000528182 754 ntTSL 3 BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 AL691432.3-201ENST00000621860 400 ntBASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
USHBP1Q8N6Y0 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 ME2-218ENST00000640965 2476 ntTSL 5 BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC24.92■■□□□ 1.58
USHBP1Q8N6Y0 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 AL512353.2-201ENST00000448759 1962 ntBASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 RN7SL510P-201ENST00000581311 263 ntBASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
USHBP1Q8N6Y0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC24.91■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms